Job Description P37651 Confidence 100.00% Date Thu Jan 5 11:56:23 GMT 2012 Rank 7 Aligned Residues 299 % Identity 14% Template c3renB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase, family 8; PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		A	W	E	Q	F	K	K	D	Y	I	S	Q	E	G	R	V	I	.	.	.	.	.	.	.	D	P	S	D	A	R	K	I	T	T	S	E	G	Q	S	Y	G	M	F	S	A	L	A	A	N	D	R	A	A	F	D	N	I	L	D	W	T	Q	N	N	L	A	Q	G	S	L	K	E	R	L	P	A	W	L	W	G
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.						.																																						.	.	.	.									.
Template Conservation																															.																																						.	.	.	.									.
Template Sequence		L	F	D	F	I	E	K	D	L	S	K	S	G	Y	G	I	Y	T	N	Y	I	D	K	S	D	I	T	K	G	.	H	S	V	L	S	E	S	E	G	L	X	X	L	Y	S	V	N	A	N	N	K	E	L	F	D	E	H	F	D	I	V	K	E	X	R	L	K	.	.	.	.	N	G	L	I	S	W	R	K	.
Template Known Secondary structure													T	T	T			B	S		S	S	S							T	.	T																	T	T															T	B		T	.	.	.	.	T	S	S	B		S			.
Template Predicted Secondary structure																															.																																						.	.	.	.									.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	E	N	S	K	W	E	V	L	D	S	N	S	A	S	D	G	D	V	W	M	A	W	S	L	L	E	A	G	R	L	W	K	E	Q	R	Y	T	D	I	G	S	A	L	L	K	R	I	A	R	E	E	V	V	T	V	P	G	L	G	S	M	L	L	P	G	K	V	G	F	A	E	D	N	S	W	R	F	N
Query Conservation
Alig confidence		.	.	.	.	.																																																				.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.																																																				.	.	.	.	.													.	.
Template Sequence		.	.	.	.	.	E	G	D	E	N	S	P	S	S	A	T	I	D	E	L	R	I	I	K	A	L	L	L	A	N	N	R	W	N	S	F	Y	Y	K	F	Y	A	I	N	I	A	N	S	L	L	K	H	A	E	E	N	.	.	.	.	.	E	T	L	V	D	Y	I	D	N	Y	G	K	.	.	G	N	T	T	T
Template Known Secondary structure		.	.	.	.	.		T	T				S																																									T			T	.	.	.	.	.	T				S				S	S		B	.	.		S
Template Predicted Secondary structure		.	.	.	.	.																																																				.	.	.	.	.													.	.
Template SS confidence
							124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		P	S	Y	L	P	P	T	L	A	Q	Y	F	T	R	F	G	A	P	W	T	T	L	R	E	T	N	Q	R	L	L	L	E	T	A	P	.	.	.	K	G	F	S	P	D	W	V	R	Y	E	K	D	K	G	W	Q	L	K	A	E	K	T	L	I	S	S	Y	D	A	I	R	V	Y	M	W	V	G	M	M	P	D
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.											.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence		L	C	Y	L	D	L	P	T	X	K	L	L	S	Q	V	D	K	K	W	E	G	I	Y	E	K	S	N	S	I	I	E	N	G	K	I	S	E	E	V	P	L	Y	R	K	V	F	Y	E	.	.	.	.	E	T	Q	K	Y	D	E	E	E	N	V	D	F	L	L	S	T	I	V	I	L	N	R	I	E	A	G	E
Template Known Secondary structure		G	G	G											T	T		T															T	T	B			S	S	S			B		S				T	.	.	.	.	T	T	T						S																	T	T
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																					.																															.	.	.	.	.
Query SS confidence																																					.																															.	.	.	.	.
Query Sequence		S	D	P	Q	K	A	R	M	L	N	R	F	K	P	M	A	T	F	T	E	K	N	G	Y	P	P	E	K	V	D	V	A	T	G	K	.	A	Q	G	K	G	P	V	G	F	S	A	A	M	L	P	F	L	Q	N	R	D	A	Q	A	V	Q	R	Q	R	V	.	.	.	.	.	A	D	N	F	P	G	S	D	A
Query Conservation																																					.																															.	.	.	.	.
Alig confidence												.	.	.	.	.	.																				.																															.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		N	E	E	S	S	I	K	W	I	K	.	.	.	.	.	.	E	K	F	K	K	D	G	F	L	V	A	T	Y	N	G	K	N	G	D	A	T	S	Q	I	E	S	P	S	I	Y	S	N	V	A	L	I	A	N	Y	I	G	D	K	E	L	F	N	K	A	I	D	K	L	K	Y	Y	Q	I	K	N	K	D	S	V
Template Known Secondary structure												.	.	.	.	.	.							S	S			S				T	T	T			B																					T																S				T	T	S	T
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	N	Y	V	L	T	L	F	G	Q	G	W	D	Q	H	R	F	R	F	S	T	K	G	E	L	L
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		L	Y	G	G	.	.	.	.	F	G	D	E	K	T	N	S	V	Y	S	F	D	N	L	N	A	L	L
Template Known Secondary structure		T	T	T	S	.	.	.	.		S	B	T	T	T	T	B
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		342	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions