Job Description P37651 Confidence 4.36% Date Thu Jan 5 11:56:23 GMT 2012 Rank 71 Aligned Residues 74 % Identity 19% Template c2a8vA_ PDB info PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		125	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																												.	.	.	.
Query SS confidence																.	.	.	.	.																																												.	.	.	.
Query Sequence		L	L	E	A	G	R	L	W	K	E	Q	R	Y	T	.	.	.	.	.	D	I	G	S	A	L	L	K	R	I	A	R	E	E	V	V	T	V	P	G	L	G	S	M	L	L	P	G	K	V	G	F	A	E	D	N	S	W	R	F	N	P	S	.	.	.	.	Y	L	P	P	T	L	A	Q	Y	F	T	R	F	G
Query Conservation																.	.	.	.	.																																												.	.	.	.
Alig confidence																.	.	.	.	.																																												.	.	.	.
Template Conservation
Template Sequence		L	I	T	L	G	E	N	M	G	L	E	N	L	A	R	M	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	D	I	F	G	D	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I	Y	V	S	P	S	Q	I	R	R	F	N	L	R	T
Template Known Secondary structure								T	T	T				G	G	G	S																T	T													T	T	S							T	T	T	T	T	S			T	T													T			T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		196	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	T
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		94	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions