Job Description P33222 Confidence 95.77% Date Thu Jan 5 11:51:22 GMT 2012 Rank 29 Aligned Residues 169 % Identity 11% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.													.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	E	P	F	Y	F	C	C	C	Q	D	T	D	E	D	R	S	T	V	L	Y	L	Q	D	C	A	Q	Q	A	G	Q	E	S	R	F	I	Y	I	E	D	L	G	L	G	V	G	G	V	L	T	D	L	D	D	N	.	.	.	.	.	.	.	.	.	.	.	.	V	I	Q	R	A	F	K	L	Y	P	L	E
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		R	D	R	R	V	R	V	A	V	V	F	G	G	A	I	S	C	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	.	.	.	.	.	I	T	P	A	G	S	W	V	L	T	D	A	N	V	S	L	P	P	G	A	G	E	V	L	E	S	V	D	V	V	F	P	V	L	H	G	P
Template Known Secondary structure			T	T																								S		T	T	T								.	.	.	.	.			T	T														T	T							T		S									T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.															.	.	.	.												.
Query SS confidence																										.	.															.	.	.	.												.
Query Sequence		W	M	M	R	D	D	N	G	P	L	L	R	K	R	R	E	Q	W	V	E	P	L	W	K	.	.	S	I	L	S	N	K	G	L	M	P	L	L	W	R	.	.	.	.	F	F	P	G	H	P	N	L	L	A	S	.	W	F	D	G	E	K	P	Q	I	A	A	G	E	S	Y	V	R	K	P	I	Y	S	R	E
Query Conservation																										.	.															.	.	.	.												.
Alig confidence																										.	.															.	.	.	.												.
Template Conservation
Template Sequence		Y	G	E	D	G	T	I	Q	G	L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	T	L	H	R	Q	E	C	E	R	L	G	L	P	V	F	V	K	P	A	R	G	G	S
Template Known Secondary structure		T														T			B	S	S	S										B											T	T			B								T	T														S							S	B		S	T
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		G	G	N	V	T	I	F	D	G	K	N	N	V	V	D	.	H	A	D	G	D	Y	A	D	E	P	M	I	Y	Q	A	F	Q	P
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		S	I	G	V	S	R	V	S	S	W	D	Q	L	P	A	A	V	A	R	A	R	R	H	D	P	K	V	I	V	E	A	A	I	S
Template Known Secondary structure		T	T	T						S	G	G	G										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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