Job Description P33222 Confidence 100.00% Date Thu Jan 5 11:51:22 GMT 2012 Rank 2 Aligned Residues 331 % Identity 27% Template c2vpmB_ PDB info PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase Resolution 2.8 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	L	D	Q	I	A	A	D	N	G	F	D	F	H	I	I	D	N	E	I	Y	W	D	E	S	R	A	Y	R	F	T	L	R	Q	I	E	E	Q	I	E	K	P	T	A	E	L	H	Q	M	C	L	E	V	V	D	R	A	V	K	D	E	E	I	L	T	Q	L	A	I	P	P	L	Y	W	D	V	I	A	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	E	R	L	F	V	E	E	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	S	Y	Y	E	S	N	H	E	F	H	L	R	C	V	A	Y	G	T	Q	L	H	A	I	F	M	E	A	T	A	Q	V	I	E	S	D	E	K	L	R	L	F	A	I	P	E	E	F	W	P	R	I	R	H
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			T								T	T			G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250															.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		S	W	R	A	R	D	P	S	L	Y	G	R	M	D	F	A	W	C	G	N	.	A	P	V	K	L	L	E	Y	N	A	D	T	P	T	S	L	Y	E	S	A	Y	F	Q	W	L	W	L	E	D	A	R	R	S	G	I	I	P	R	D	A	D	Q	Y	N	A	I	Q	E	R	L	I	S	R	F	S	E	L	Y	S
Query Conservation																						.
Alig confidence																						.																																			.	.
Template Conservation																																																									.	.
Template Sequence		S	W	K	Y	Q	Q	T	Y	I	S	G	R	F	D	F	A	F	N	N	E	T	G	E	V	K	C	F	E	Y	N	A	D	S	A	S	T	L	L	E	C	G	L	I	Q	Q	K	W	A	E	S	V	G	L	D	K	.	.	Q	D	T	R	G	S	G	F	A	V	E	R	N	L	K	M	A	W	A	N	S	G	A
Template Known Secondary structure										S										T	T	T										T	T			T	T						T										T				.	.	T	T				G	G	G	G												S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		R	E	P	F	Y	F	C	C	C	Q	D	T	D	E	D	R	S	T	V	L	Y	L	Q	D	C	A	Q	Q	A	G	Q	E	S	R	F	I	.	Y	I	E	D	L	G	L	G	V	G	G	V	L	T	D	L	D	D	N	V	I	Q	R	A	F	K	L	Y	P	L	E	W	M	M	R	D	D	N	G	P	L	L	R
Query Conservation																																						.
Alig confidence													.																									.
Template Conservation													.
Template Sequence		T	G	R	V	H	F	C	V	D	E	E	.	R	E	E	Q	Y	T	A	L	Y	C	M	Q	A	A	E	A	V	G	L	E	G	K	L	C	I	L	F	D	E	F	R	F	D	D	N	G	H	V	V	D	S	D	G	V	R	V	R	N	V	W	K	T	W	M	W	E	S	A	I	T	D	Y	Y	A	A	R	E	E
Template Known Secondary structure			S								S		.																T	T	T								T	T	T	T					T	T	S					T	T			B							S	S
Template Predicted Secondary structure													.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
																								248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	R	E	Q	W	V	E	P	L	W	K	S	I	L	S	N	K	G	L	M	P	L	L	W	R	F	F	P	G	H	P	N	L	L	A	S	W	F	D	G	E	K	P	Q	I	A	A	G	E	S	Y	V	R	K	P	I	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Conservation																																																																									.	.
Template Sequence		R	G	E	N	W	K	P	S	P	K	D	K	V	R	L	C	D	L	L	L	G	D	D	W	E	I	L	Y	F	E	P	M	W	K	V	I	P	S	N	K	A	I	L	P	M	I	Y	H	N	H	P	E	H	P	A	I	L	K	A	E	Y	E	L	T	D	E	L	R	K	H	G	.	.	Y	A	K	K	P	I	V
Template Known Secondary structure				T	T					T	T	S	B								S	S	S		T	T	S				S		G	G	G	G	T	T	T	S	G	G	G									T	T		T	T						S	S										.	.
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.			.	.	.	.	.	550	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	E	G	G	N	V	T	I	F	D	G	K	N	N	V	V	D	H	A	D	G	D	Y	A	D	E	P	M	I	Y	Q	A	F	Q	P	L	P	R	F	G	D	S	Y	T	L	I	G	S	W	I	V	D	D	E	A	C	G	M	G	I	R	E	D	N	T	L	I	T	K	D	T	S	R	F	V	P	H	Y	I
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	Q	Q	L	F	E	L	K	K	Q	D	D	Y	Y	A	I	I	G	G	W	M	I	G	D	A	F	S	G	T	G	I	R	E	D	K	S	V	I	T	G	V	D	S	P	F	A	A	V	R	I
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											B	T	T	B										T	T											S	S				G	G	G	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		579	580																												.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		386
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		632

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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