Job Description P33222 Confidence 98.21% Date Thu Jan 5 11:51:22 GMT 2012 Rank 12 Aligned Residues 202 % Identity 12% Template c2p0aA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp Resolution 1.90 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240				.
Predicted Secondary structure																																													.	.	.											.								.												.	.	.
Query SS confidence																																													.	.	.											.								.												.	.	.
Query Sequence		E	P	F	Y	F	C	C	C	Q	D	T	D	E	D	R	S	T	V	L	Y	L	Q	D	C	A	Q	Q	A	G	Q	E	S	R	F	I	Y	I	E	D	L	G	L	G	.	.	.	V	G	G	V	L	T	D	L	D	D	.	N	V	I	Q	R	A	F	.	K	L	Y	P	L	E	W	M	M	R	D	.	.	.	D
Query Conservation																																													.	.	.											.								.												.	.	.
Alig confidence																																													.	.	.											.								.												.	.	.
Template Conservation
Template Sequence		R	P	R	I	L	L	V	I	D	D	A	H	T	D	W	S	K	Y	F	H	G	K	K	V	N	G	E	I	E	I	R	V	E	Q	A	E	F	S	E	L	N	L	A	A	Y	V	T	G	G	C	M	V	D	M	Q	R	S	F	K	P	D	F	I	L	V	R	Q	H	A	Y	S	M	A	L	G	E	D	Y	R	S
Template Known Secondary structure												S	S			G	G	G	G	G	T	T				T	T	T										G	G	G							T	T	S													S						S		S			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.										290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																				.																															.	.	.	.	.	.	.	.	.
Query SS confidence																				.																															.	.	.	.	.	.	.	.	.
Query Sequence		N	G	P	L	L	R	K	R	R	E	Q	W	V	E	P	L	W	K	.	S	I	L	S	N	K	G	L	M	P	L	L	W	R	F	F	P	G	H	P	N	L	L	A	S	W	F	D	G	E	.	.	.	.	.	.	.	.	.	K	P	Q	I	A	A	G	E	S	Y	V	R	K	P	I	Y	S	R	E	G	G	N
Query Conservation																				.																															.	.	.	.	.	.	.	.	.
Alig confidence																				.							.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		L	V	I	G	L	Q	Y	G	G	L	P	A	V	N	S	L	Y	S	V	Y	N	F	C	S	K	.	.	P	W	V	F	S	Q	L	I	K	I	F	H	S	L	G	P	E	K	F	P	L	V	E	Q	T	F	F	P	N	H	K	P	M	V	T	A	P	H	F	P	V	V	V	K	L	G	H	A	H	A	G	M	G
Template Known Secondary structure									T	T					S								T	T			.	.																T	T	T	S		B							S	S	S	T	T					S	S	S	S						S	S			T	T	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	F	D	G	K	N	N	V	V	D	H	A	D	G	D	Y	A	D	E	P	M	I	Y	Q	A	F	Q	P	L	P	R	F	G	D	S	Y	T	L	I	G	S	W	I	V	D	D	E	A	C	G	M	G	I	R	E	D	N	T	L	I	T	K	D	T	S
Query Conservation
Alig confidence																																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		K	I	K	V	E	N	Q	L	D	F	Q	D	I	T	S	V	V	A	M	A	K	T	Y	A	T	T	E	A	F	I	D	S	K	Y	D	.	.	.	.	.	I	R	I	Q	K	I	G	S	N	Y	K	A	Y	M	R	T	S	I	S	G	N	W	K	A	N	T	G
Template Known Secondary structure							S															T															.	.	.	.	.							T	T										S	S	S		S	S	T	T	S	S
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.						.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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