Job Description P33222 Confidence 96.99% Date Thu Jan 5 11:51:22 GMT 2012 Rank 23 Aligned Residues 197 % Identity 11% Template c2dlnA_ PDB info PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution Resolution 2.30 Å

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		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		R	E	P	F	Y	F	C	C	C	Q	D	T	D	E	D	R	S	T	V	.	.	.	L	Y	L	Q	D	C	A	Q	Q	A	G	Q	E	S	R	F	I	Y	I	E	D	L	G	L	G	V	G	G	V	L	T	D	L	D	D	N	V	I	Q	R	A	F	K	L	Y	P	L	E	W	M	M	R	D	D	N	G	P	L
Query Conservation																					.	.	.
Alig confidence																					.	.	.																												.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		T	D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	G	G	I	D	A	Y	P	V	D	P	K	E	V	D	V	T	Q	L	.	.	.	.	.	.	K	S	M	G	F	Q	K	V	F	I	A	L	H	G	R	G	G	E	D	G	T	L	Q	G	M
Template Known Secondary structure			S									S	S	T	T																		T	T								T	T	T	S		G	G	G	S	.	.	.	.	.	.	G	G	G	T										S	T	T	T	S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50							.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.											.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure														.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	K	R	R	E	Q	W	V	E	P	L	.	.	W	K	S	I	L	S	N	K	G	L	M	P	L	L	W	R	.	.	.	.	.	.	.	.	.	.	F	F	P	G	H	P	N	L	L	A	S	W	F	D	G	E	K	P	Q	I	A	A	G	E	S	Y	V	R	K	P	I	Y	S	R	E	G	G	N	V	T
Query Conservation														.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	L	P	V	I	V	K	P	S	R	E	G	S	S	V	G	M	S
Template Known Secondary structure						T			B	S	S																						T	T			B													S				T	T	T						T	T		S	S						S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		I	F	D	G	K	N	N	V	V	D	H	A	D	.	G	D	Y	A	D	E	P	M	I	Y	Q	A	F	Q	P	L	P	R	F	G	D	S	Y	T	L	I	G	S	W	I	V	D	D	E	A	C	G	M	G	I	R	E	D	N	T	L	I	T	K	D	T	S
Query Conservation															.
Alig confidence															.																.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	E	E	V	L	I	E	K	W	L	S	.	.	.	.	.	.	.	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P	S	G	T	F	Y	D	Y	E	A
Template Known Secondary structure				S	S	G	G	G										T	T		S										.	.	.	.	.	.	.	S									T	T											S	S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions