Job Description P77610 Confidence 4.39% Date Thu Jan 5 12:31:02 GMT 2012 Rank 37 Aligned Residues 378 % Identity 10% Template d1xmea1 SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 2.30

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.						.	.	.
Predicted Secondary structure																																													.	.	.	.																										.	.	.	.	.
Query SS confidence																																													.	.	.	.																										.	.	.	.	.
Query Sequence		E	K	A	A	Y	V	A	G	W	M	Y	F	I	N	W	A	M	T	G	I	V	D	I	T	A	V	A	L	Y	M	H	Y	W	G	A	F	G	G	V	P	Q	W	V	.	.	.	.	F	A	L	A	A	L	T	I	V	G	T	M	N	M	I	G	V	K	W	F	A	E	M	E	F	.	.	.	.	.	W	F	A
Query Conservation																																													.	.	.	.																										.	.	.	.	.
Alig confidence																																													.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		M	G	L	M	W	L	S	W	W	M	A	F	I	G	L	V	V	A	A	L	P	L	L	A	N	E	A	T	V	L	Y	T	F	Y	P	P	L	K	G	H	W	A	F	Y	L	G	A	S	V	F	V	L	S	T	W	V	S	I	Y	I	V	L	D	L	W	R	R	W	K	A	A	N	P	G	K	V	T	P	L	V
Template Known Secondary structure																									T	T	S			S	T	T	T	T		T	T	B																																		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	K	V	L	A	I	V	T	F	L	V	V	G	T	V	F	L	G	S	G	Q	P	L	D	G	N	T	T	G	F	H	L	I	T	D	N	G	G	F	F	P	H	G	L	L	P	A	L	V	L	I	Q	G	V	V	F	A	F	A	S	I	E	M	V	G	T	A	A	G	E	C	K	D	P	Q	T	M	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	M	A	V	V	F	W	L	M	W	F	L	A	S	L	G	L	V	L	E	A	V	L	F	L	L	P	W	S	F	G	L	V	E	G	V	D	P	L	V	A	R	T	L	F	W	W	T	G	H	P	I	V	Y	F	W	L	L	P	A	Y	A	I	I	Y	T	I	L	P	K	Q	A	G	G	K	L	V	S	D
Template Known Secondary structure																										T							T	S		S																T																	T						T	S		B	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	N	S	V	I	W	R	I	G	L	F	Y	V	G	S	V	V	L	L	V	M	L	L	P	W	S	A	Y	Q	A	G	Q	S	P	F	V	T	F	F	S	K	L	G	V	P	Y	I	G	S	I	M	N	I	V	V	L	T	A	A	L	S	S	L	N	S	G	L	Y	C	T	G	R	I	L	R	S	M	A
Query Conservation
Alig confidence																			.	.	.	.	.	.																						.	.	.	.	.																													.	.	.
Template Conservation																			.	.	.	.	.	.																						.	.	.	.	.																													.	.	.
Template Sequence		P	M	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	.	.	.	.	.	.	G	F	H	H	Q	F	A	D	P	G	I	D	P	T	W	K	M	I	H	S	V	.	.	.	.	.	L	T	L	F	V	A	V	P	S	L	M	T	A	F	T	V	A	A	S	L	E	F	A	G	R	L	R	G	.	.	.
Template Known Secondary structure															S	S	T	T	.	.	.	.	.	.	G	G	G	G		T	T		S	S	S											.	.	.	.	.																											T	T	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.																						.	.	.	.	.																													.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.							280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.										.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.
Query Sequence		M	G	G	S	A	P	S	F	M	A	K	M	S	R	Q	H	V	P	Y	A	G	I	L	A	T	L	V	V	Y	V	V	G	V	F	L	N	Y	L	V	P	S	R	V	F	E	I	V	L	N	F	.	.	.	.	.	.	.	.	.	A	S	L	G	I	I	A	S	W	A	F	I	I	V	C	Q	M	R	L	R	K
Query Conservation																																																				.	.	.	.	.	.	.	.	.
Alig confidence		.																																																		.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	G	R	G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	I	V	N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V	T	L	T	A	M	G	S	L	Y	W	L	L	P	N
Template Known Secondary structure		.			S	T	T						S		T	T																									T	S	G	G	G					T	T	B	T										T	T	T									T
Template Predicted Secondary structure		.
Template SS confidence
			329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.																					.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	K	E	G	K	A	A	D	V	S	F	K	L	P	G	A	P	F	T	S	W	L	T	L	L	F	L	L	S	V	L	V	L	M	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	P	N	G	T	Y	T	I	A	A	L	P	I	I	G	I	L	L	V	I	G	W
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	G	K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L	L	N	V	P	R	R	A	Y	I	A	Q	V	P	D	A	Y	P	H	A	A	V	P	M	V	F	N	V	L	A	G	I	V	L	L	V	A	L	L	L	F	I	Y	G
Template Known Secondary structure																																							T	T		B	S	S			G	G	G	S	G	G	G		G	G	G
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	R	K	R	V	A	E	I	H	S	T	A	P	V	V	E	E	D	E	E	K	Q	E	I	V	F	K	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	S	V	L	L	S	R	E	R	K	P	E	L	A	E	A	P	L	P	F	A	E	V	I	S	G	P	E	D	R
Template Known Secondary structure							T										S	S							B				S	S
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low