Job Description P77610 Confidence 100.00% Date Thu Jan 5 12:31:02 GMT 2012 Rank 1 Aligned Residues 424 % Identity 17% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		H	K	A	M	G	N	R	Q	V	Q	M	I	A	I	G	G	A	I	G	T	G	L	F	L	G	A	G	A	R	L	Q	M	A	G	P	A	L	A	L	V	Y	L	I	C	G	L	F	S	F	F	I	L	R	A	L	G	E	L	V	L	H	R	P	S	S	G	S	F	V	S	Y	A	R	E	F	L	G	E	.	K
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		A	A	Y	V	A	G	W	M	Y	F	I	N	W	A	M	T	G	I	V	D	I	T	A	V	A	L	Y	M	H	Y	W	G	A	F	G	G	V	.	.	P	Q	W	V	F	A	L	A	A	L	T	I	V	G	T	M	N	M	I	G	V	K	W	F	A	E	M	E	F	W	F	A	L	I	K	V	L	A	I	V	T
Query Conservation																																							.	.
Alig confidence																																							.	.
Template Conservation
Template Sequence		I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L
Template Known Secondary structure																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	V	V	G	T	V	F	L	G	S	G	Q	P	L	D	G	N	T	T	G	F	H	L	I	T	D	N	G	G	F	F	P	H	G	L	L	P	A	L	V	L	I	Q	G	V	V	F	A	F	A	S	I	E	M	V	G	T	A	A	G	E	C	K	D	P	Q	T	M	V	P	K	A	I	N	S	V	I	W	R
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	F	A	G	L	I	T	I	H	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I
Template Known Secondary structure												G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.														.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		I	G	L	F	Y	V	G	S	V	V	L	L	V	M	L	L	P	W	S	A	Y	.	Q	A	G	Q	S	P	F	V	T	F	F	S	K	L	G	V	P	Y	I	G	S	I	M	N	I	V	V	L	T	A	A	L	S	S	L	N	S	G	L	Y	C	T	G	R	I	L	R	S	M	A	M	G	G	S	A	P	S	F
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F
Template Known Secondary structure															T	T	S								T	G	G	G																																			T	T	T											S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	M	S	R	Q	H	V	P	Y	A	G	I	L	A	T	L	V	V	Y	V	V	G	V	F	L	N	Y	L	V	P	S	R	V	F	E	I	V	L	N	F	A	S	L	G	I	I	A	S	W	A	F	I	I	V	C	Q	M	R	L	R	K	A	I	K	E	G	K	A	A	D	V	S	F	K	L	P	G	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Sequence		F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	.	.	.	.	.	.	.	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	.	.	.	.	.	.	.	.	I	V
Template Known Secondary structure				T	T	S			S		T																	S		.	.	.	.	.	.	.																										T										.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.									.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	T	S	W	L	T	L	L	F	L	L	S	V	L	V	L	M	A	F	D	Y	P	N	G	T	Y	T	I	A	A	L	P	I	I	G	I	L	L	V	I	G	W	F	G	V	R	K	R	V	A	E	I	H	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y
Template Known Secondary structure																																																						G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.