Job Description P77610 Confidence 100.00% Date Thu Jan 5 12:31:02 GMT 2012 Rank 3 Aligned Residues 457 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		Q	H	A	A	K	R	R	W	L	N	A	H	E	E	G	Y	H	K	A	M	G	N	R	Q	V	Q	M	I	A	I	G	G	A	I	G	T	G	L	F	L	G	A	G	A	R	L	Q	M	A	G	P	.	A	L	A	L	V	Y	L	I	C	G	L	F	S	F	F	I	L	R	A	L	G	E	L	V	L	H	R	P
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		E	A	R	S	L	L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G
Template Known Secondary structure					B				S	T	T	S				G	G	G			B															S	T										T	T	T	S																								T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		S	S	G	S	F	V	S	Y	A	R	E	F	L	G	E	K	A	A	Y	V	A	G	W	M	Y	F	I	N	W	A	M	T	G	I	V	D	I	T	A	V	A	L	Y	M	H	Y	W	G	A	.	.	F	G	G	V	P	Q	W	V	F	A	L	A	A	L	T	I	V	G	T	M	N	M	I	G	V	K	W	F	A
Query Conservation																																																			.	.
Alig confidence		.	.																																																.	.
Template Conservation		.	.
Template Sequence		.	.	I	N	F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R
Template Known Secondary structure		.	.							T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	E	F	W	F	A	L	I	K	V	L	A	I	V	T	F	L	V	V	G	T	V	F	L	G	S	G	Q	P	L	D	G	N	T	T	G	F	H	L	I	T	D	N	G	G	F	F	P	H	G	L	L	P	A	L	V	L	I	Q	G	V	V	F	A	F	A	S	I	E	M	V	G	T	A	A	G	E	C	K
Query Conservation
Alig confidence																									.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	.	.	.	.	.	.	.	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P
Template Known Secondary structure																									.	.	.	.	.	.	.			T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	Q	T	M	V	P	K	A	I	N	S	V	I	W	R	I	G	L	F	Y	V	G	S	V	V	L	L	V	M	L	L	P	W	S	A	Y	Q	A	G	Q	S	P	F	V	T	F	F	S	K	L	G	V	P	Y	I	G	S	I	M	N	I	V	V	L	T	A	A	L	S	S	L	N	S	G	L	Y	C	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N
Template Known Secondary structure		T																																								S		S											T																				T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	R	S	M	A	M	G	G	S	A	P	S	F	M	A	K	M	S	R	Q	H	V	P	Y	A	G	I	L	A	T	L	V	V	Y	V	V	G	V	F	L	N	Y	L	V	P	S	R	V	F	E	I	V	L	N	F	A	S	L	G	I	I	A	S	W	A	F	I	I	V	C	Q	M	R	L	R	K	A	I
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	.	.	.	.	.	.	.	.	.	.	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R
Template Known Secondary structure		T											S	T	T	T					.	.	.	.	.	.	.	.	.	.													T		G	G	G	T														T	T													T	T	S	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.											.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		408	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		K	E	G	K	A	.	A	D	V	S	F	K	L	P	G	A	P	F	T	S	W	L	T	L	L	F	L	L	S	V	L	V	L	M	A	F	D	Y	P	N	G	T	Y	T	I	A	A	L	P	I	I	G	I	L	L	V	I	G	W	F	G	V	R	K	R	V	A	E	I	H	S	T	A	P	V	V	E	E	D	E
Query Conservation							.
Alig confidence							.																																						.	.
Template Conservation																																													.	.
Template Sequence		I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	.	.	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D	Y	L
Template Known Secondary structure								T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G				.	.																		T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure																																													.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.			.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		487	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		467	.