Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 12 Aligned Residues 371 % Identity 20% Template c3swoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: crystal structure of a glutaryl-coa dehydrogenase from mycobacterium2 smegmatis in complex with fadh2 Resolution 1.45 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	N	L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R	L
Query Conservation
Alig confidence																									.																																		.
Template Conservation																									.																																		.
Template Sequence		T	D	R	L	L	D	Q	D	E	R	D	I	A	A	T	V	R	Q	F	V	D	T	R	.	L	K	P	N	V	E	G	W	F	E	S	A	T	L	P	S	E	L	A	K	E	F	G	N	L	G	V	L	G	M	H	L	Q	.	G	Y	G	C	A	G	T	N	A	V	S	Y	G	L	A	C	M	E	L	E	A	G
Template Known Secondary structure		G	G	G	G	S																			.	T											T				T	T									T		T	T	T	T	S		.	S	T	T
Template Predicted Secondary structure																									.																																		.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		G	A	P	T	Y	V	L	Y	Q	L	P	G	.	.	G	F	N	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	I	Y	L	N	G	S	K	C	F	I	T	S
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		D	S	G	F	R	S	F	V	S	V	Q	G	S	L	S	M	F	S	I	Y	R	Y	G	S	E	E	Q	K	N	E	W	L	P	R	L	A	A	G	D	A	I	G	C	F	G	L	T	E	P	D	F	G	S	N	P	A	G	M	R	T	R	A	R	R	D	G	S	D	W	I	L	N	G	T	K	M	W	I	T	N
Template Known Secondary structure													T	T	T																								T	S	S								B	T	T	B	S	S		G	G	G									T	T													T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		S	A	Y	T	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V	K	E	E	F
Query Conservation																																								.
Alig confidence																			.	.	.	.	.																	.																																		.
Template Conservation																			.	.	.	.	.																																																			.
Template Sequence		G	N	L	A	D	V	A	T	V	W	A	Q	T	D	D	G	I	.	.	.	.	.	R	G	F	L	V	P	T	D	T	P	G	F	T	A	N	E	I	H	R	K	L	S	L	R	A	S	V	T	S	E	L	V	L	D	N	V	R	L	P	A	S	A	Q	L	P	L	A	E	G	L	.	S	A	P	L	S	C	L
Template Known Secondary structure		T	T	T		S							B		T	T	S		.	.	.	.	.							T	T	S	T	T										S	S			S	S														G	G	G	B		T	T			S	T	.
Template Predicted Secondary structure																			.	.	.	.	.																																																			.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	E	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	S	G	D	A	A	M	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	A	R	F	G	I	V	F	G	A	L	G	A	A	R	D	S	L	E	T	T	I	A	Y	T	Q	S	R	E	V	F	D	K	P	L	S	N	Y	Q	L	T	Q	E	K	L	A	N	M	T	V	E	L	G	K	G	M	L	L	A	I	H	L	G	R	I	K	D	A	E	G	V	R	P	E	Q	I	S	L	G
Template Known Secondary structure																																	T	T			G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V	L	K	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	N	N	V	R	E	A	I	A	I	A	R	E	C	R	T	L	L	G	G	S	G	I	T	L	E	Y	S	P	L	R	H	A	N	N	L	E	S	V	L	T	Y	E	G	T	S	E	M	H	L	L	S	I	G	K	A	L	T	G	K	A
Template Known Secondary structure																					G	G	G	G	G	S	S	S	S	T														S	S	S															S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions