Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 25 Aligned Residues 361 % Identity 27% Template c3nf4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to flavin adenine dinucleotide Resolution 2.35 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	D	.	F	N	L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R
Query Conservation				.
Alig confidence				.																						.
Template Conservation																										.
Template Sequence		V	D	R	L	L	P	S	Q	E	A	A	E	L	I	E	L	T	R	E	I	A	D	K	V	.	L	D	P	I	V	D	R	H	E	K	D	E	T	Y	P	E	G	V	F	E	Q	L	G	A	A	G	L	L	S	L	P	Q	P	E	E	W	G	G	G	G	Q	P	Y	E	V	Y	L	Q	V	L	E	E	I	A	A
Template Known Secondary structure							S																			.	T	T	T	T								T				T	T								T	T	T	T	S	S	S	S		G	G	G	T	S																	T
Template Predicted Secondary structure																										.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		L	G	A	P	T	Y	V	L	Y	Q	L	P	G	G	F	N	.	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	I	Y	L	N	G	S	K	C	F	I	T	S
Query Conservation																		.
Alig confidence																		.																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.
Template Sequence		R	W	A	S	V	A	V	A	V	S	V	H	S	L	S	S	H	P	L	L	V	F	G	T	E	E	Q	K	K	R	W	L	P	G	M	L	S	G	E	Q	I	G	A	Y	S	L	S	E	P	R	C	.	.	.	.	.	.	.	.	.	A	A	T	P	T	D	G	G	Y	V	I	N	G	S	K	S	W	I	T	H
Template Known Secondary structure		T															T																				T	S	S	S													.	.	.	.	.	.	.	.	.						T	T													T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.										.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		S	A	Y	T	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V	K	E	E	F
Query Conservation																																								.
Alig confidence																			.	.	.	.																		.
Template Conservation																			.	.	.	.
Template Sequence		G	G	K	A	D	F	Y	T	L	F	A	R	T	G	S	R	G	.	.	.	.	V	S	C	F	L	V	P	A	D	Q	P	G	L	S	F	G	K	P	E	E	K	M	G	L	H	A	V	P	T	T	S	A	F	Y	D	N	A	R	I	D	A	D	R	R	I	G	E	E	G	Q	G	L	Q	I	A	F	S	A	L
Template Known Secondary structure		T	T	T		S										T	T		.	.	.	.								T	T		T	T										S	S			S	S														G	G	G			S	S	T	T								T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	E	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	S	G	D	A	A	M	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	G	R	L	G	I	A	A	V	A	T	G	L	A	Q	A	A	L	D	E	A	V	A	Y	A	N	E	R	T	A	F	G	R	K	I	I	D	H	Q	G	L	G	F	L	L	A	D	M	A	A	A	V	A	T	A	R	A	T	Y	L	D	A	A	R	R	R	D	Q	G	R	P	Y	S	Q	Q	A	S	I	A
Template Known Secondary structure																												T	T				T	T			G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	T	A	T	D	A	A	M	K	V	T	T	D	A	V	Q	V	F	G	G	V	G	Y	T	R	D	Y	R	V	E	R	Y	M	R	E	A	K	I	M	Q	I	F	E	G	T	N	Q	I	Q	R	L	V	I	A	R	G	L
Template Known Secondary structure																					G	G	G	G	G	S	T	T	S	S												T	T	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions