Phyre 2 alignment of P60584 with c3m9vA

Job Description P60584
Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012

Rank 30 Aligned Residues 369

% Identity 18% Template c3m9vA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp

Resolution 2.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence	L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	.	F	V	T	L	A	A	V	W	M	E	L	G	R	L	G	A	P
Query Conservation																																																															.
Alig confidence																			.	.																																											.
Template Conservation																			.	.
Template Sequence	V	T	P	A	G	R	V	L	L	D	R	L	A	A	H	L	P	R	.	.	I	R	S	T	A	A	E	H	D	R	D	G	T	F	P	T	D	T	F	D	A	L	R	K	D	G	L	M	G	A	T	V	P	A	E	L	G	G	L	G	V	D	R	L	Y	D	V	A	V	A	L	L	A	V	A	R	A	D	A	S
Template Known Secondary structure	S	S												T	T				.	.												T													T	T	G	G	G	T	T	S		G	G	G	T	S
Template Predicted Secondary structure																			.	.
Template SS confidence
	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence	T	Y	V	L	Y	Q	L	P	G	G	.	.	F	N	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	I	Y	L	N	G	S	K	C	F	I	T	S	S	A	Y
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence	T	A	L	A	L	H	M	Q	L	S	R	G	L	T	L	G	Y	E	W	R	H	G	D	E	R	A	R	T	L	A	E	R	I	L	R	G	M	V	A	G	D	A	V	V	C	S	G	I	K	D	H	H	T	A	V	T	T	L	R	P	D	G	A	G	G	W	L	L	S	G	R	K	T	L	V	S	M	A	P	V
Template Known Secondary structure																						S																		T												T	T									S	S	S												T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence	T	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V	K	E	E	F	D	H	E
Query Conservation																																				.
Alig confidence													.	.																						.
Template Conservation													.	.
Template Sequence	G	T	H	F	V	I	N	A	R	T	D	G	.	.	G	P	P	R	L	A	S	P	V	V	T	R	D	T	P	G	F	T	V	L	D	N	W	D	G	L	G	M	R	A	S	G	T	V	D	I	V	F	D	D	C	P	I	P	A	D	H	V	L	M	R	D	P	A	R	N	D	A	V	L	A	G	Q	T	V	S
Template Known Secondary structure		S											.	.												T	T		T	T										S	S		T	T	S														G	G	G										G	G	G
Template Predicted Secondary structure													.	.
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.
Predicted Secondary structure																																							.	.																													.	.	.	.	.
Query SS confidence																																							.	.																													.	.	.	.	.
Query Sequence	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	.	.	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	.	.	.	.	.	G	T	I	T	S	G	D
Query Conservation																																							.	.																													.	.	.	.	.
Alig confidence																																							.	.																													.	.	.	.	.
Template Conservation
Template Sequence	S	V	S	V	L	G	V	Y	V	G	V	A	Q	A	A	Y	D	T	A	V	A	A	L	E	R	R	P	E	P	P	Q	A	A	A	L	T	L	V	A	E	I	D	S	R	L	Y	A	L	R	A	T	A	G	S	A	L	T	A	A	D	A	L	S	A	D	L	S	G	D	M	D	E	R	G	R	Q	M	M	R	H
Template Known Secondary structure		G	G	G																					T		S	S																																							S	S
Template Predicted Secondary structure
Template SS confidence
	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

	314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence	A	A	M	C	K	Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	.	L	T	L	G	R	A	V	L	K
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence	F	Q	C	A	K	L	A	V	N	R	L	A	P	E	I	V	S	D	C	L	S	L	V	G	G	A	S	Y	T	A	G	H	P	L	A	R	L	L	R	D	V	Q	A	G	R	F	M	Q	P	Y	A	Y	V	D	A	V	D	F	L	S	A	Q	A	L	G
Template Known Secondary structure																									G	G	G	G	S	T	T	S									T	T	G	G	G	T	S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
	338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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