Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 13 Aligned Residues 375 % Identity 28% Template c2uxwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase; PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl) Resolution 1.45 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	.	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R	L	G	A	P
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		L	N	E	E	Q	T	Q	F	L	K	E	L	V	E	P	V	S	R	F	F	E	E	V	N	D	P	A	K	N	D	A	L	E	M	V	E	E	T	T	W	Q	G	L	K	E	L	G	A	F	G	L	Q	V	P	S	E	L	G	G	V	G	L	C	N	T	Q	Y	A	R	L	V	E	I	V	G	M	H	D	L	G
Template Known Secondary structure																								T										T	S												T	T	T	T		T	T	S		G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		84	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																																																							.	.
Query SS confidence											.	.																																																							.	.
Query Sequence		T	Y	V	L	Y	Q	L	P	G	.	.	G	F	N	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	.	.	I	Y	L	N	G	S	K	C	F	I	T	S	S
Query Conservation											.	.																																																							.	.
Alig confidence											.	.																																																							.	.
Template Conservation
Template Sequence		V	G	I	T	L	G	A	H	Q	S	I	G	F	K	G	I	L	L	F	G	T	K	A	Q	K	E	K	Y	L	P	K	L	A	S	G	E	T	V	A	A	F	C	L	T	E	P	S	S	G	S	D	A	A	S	I	R	T	S	A	V	P	S	P	C	G	K	Y	Y	T	L	N	G	S	K	L	W	I	S	N	G
Template Known Secondary structure											T	T	T	T																					T	T	S	S								B	T	T	B	S	S		G	G	G									T	T	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																						.	.	.	.	.																		.
Query SS confidence																						.	.	.	.	.																		.
Query Sequence		A	Y	T	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	.	.	.	.	.	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V
Query Conservation																						.	.	.	.	.																		.
Alig confidence																						.	.	.	.	.																		.
Template Conservation
Template Sequence		G	L	A	D	I	F	T	V	F	A	K	T	P	V	T	D	P	A	T	G	A	V	K	E	K	I	T	A	F	V	V	E	R	G	F	G	G	I	T	H	G	P	P	E	K	K	M	G	I	K	A	S	N	T	A	E	V	F	F	D	G	V	R	V	P	S	E	N	V	L	G	E	V	G	S	G	F	K	V	A
Template Known Secondary structure		T	T		S													T	T	T														G	G	G	S	S										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		K	E	E	F	D	H	E	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	.	S	G
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		M	H	I	L	N	N	G	R	F	G	M	A	A	A	L	A	G	T	M	R	G	I	I	A	K	A	V	D	H	A	T	N	R	T	Q	F	G	E	K	I	H	N	F	G	L	I	Q	E	K	L	A	R	M	V	M	L	Q	Y	V	T	E	S	M	A	Y	M	V	S	A	N	M	D	Q	G	A	T	D	F	Q	I
Template Known Secondary structure																																					T	T			G	G	G	S																														T	T		S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	M	C	K	Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V	L	K	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	I	S	K	I	F	G	S	E	A	A	W	K	V	T	D	E	C	I	Q	I	M	G	G	M	G	F	M	K	E	P	G	V	E	R	V	L	R	D	L	R	I	F	R	I	F	E	G	T	N	D	I	L	R	L	F	V	A	L	Q	G	C	M	D	K
Template Known Secondary structure																										T					S	S	T	T	S									G	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions