Phyre 2 alignment of P60584 with c2rehD

Job Description P60584
Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012

Rank 27 Aligned Residues 378

% Identity 18% Template c2rehD_

PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nitroalkane oxidase; PDBTitle: mechanistic and structural analyses of the roles of arg4092 and asp402 in the reaction of the flavoprotein nitroalkane3 oxidase

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.
Query Sequence	M	D	F	N	L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	.	.	.	.	.	.	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W
Query Conservation																																						.	.	.	.	.	.
Alig confidence																				.																		.	.	.	.	.	.
Template Conservation																				.
Template Sequence	V	D	F	K	L	S	P	S	Q	L	E	A	R	R	H	A	Q	A	F	.	A	N	T	V	L	T	K	A	S	A	E	Y	S	T	Q	K	D	Q	L	S	R	F	Q	A	T	R	P	F	Y	R	E	A	V	R	H	G	L	I	K	A	Q	V	P	I	P	L	G	G	T	M	E	S	L	V	H	E	S	I	I	L
Template Known Secondary structure																				.				T	G	G	G						T	T			S								T										T	T	T	T	G	G	G	S	B	G	G	G	T			B
Template Predicted Secondary structure																				.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																						.																					.	.																					.	.	.	.	.
Query SS confidence																						.																					.	.																					.	.	.	.	.
Query Sequence	M	E	L	G	R	L	G	A	P	T	Y	V	L	Y	Q	L	P	G	G	F	N	.	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	.	.	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	.	.	.	.	.	L	K	T	T	Y	T	R	R	N	G	K
Query Conservation																						.																					.	.																					.	.	.	.	.
Alig confidence																						.																					.	.																					.	.	.	.	.
Template Conservation
Template Sequence	E	E	L	F	A	V	E	P	A	T	S	I	T	I	V	A	T	A	L	G	L	M	P	V	I	L	C	D	S	P	S	L	Q	E	K	F	L	K	P	F	I	S	G	E	G	E	P	L	A	S	L	M	H	S	E	P	N	G	T	A	N	W	L	Q	K	G	G	P	G	L	Q	T	T	A	R	K	V	G	N	E
Template Known Secondary structure					T	T			T	T																	S	S										G	G	G	S	S	S		S											T	T		S	T	T	T	T		T	T	S				S							T	T
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.										.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.								.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.															.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.															.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence	I	Y	L	N	G	S	K	C	F	I	T	S	S	A	Y	T	.	.	.	.	.	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	.	.	.	.	.	.	.	.	.	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	.	.	.	.	.	.	.	K	L	E	K	L	G	L	R	M	D
Query Conservation																	.	.	.	.	.															.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.															.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence	W	V	I	S	G	E	K	L	W	P	S	N	S	G	G	W	D	Y	K	G	A	D	L	A	C	V	V	C	R	V	S	D	D	P	S	K	P	Q	D	P	N	V	D	P	A	T	Q	I	A	V	L	L	V	T	R	E	T	I	A	N	N	K	K	D	A	Y	Q	I	L	G	E	P	E	L	A	G	H	I	T	T
Template Known Secondary structure											T	T	T	T	T	T	T	T	S			S										S	S	T	T	S				T	T	S		G	G	G	G													T	S		G	G	G										S	S		T	T
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																							.																																												.
Query SS confidence																							.																																												.
Query Sequence	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	.	N	G	F	N	R	V	K	E	E	F	D	H	E	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	.	E	A	I	G	R	F	Q	L	I	Q	E	K	F
Query Conservation																							.																																												.
Alig confidence																							.																																												.
Template Conservation
Template Sequence	S	G	P	H	T	R	F	T	E	F	H	V	P	H	E	N	L	L	C	T	P	G	L	K	A	Q	G	L	V	E	T	A	F	A	M	S	A	A	L	V	G	A	M	A	I	G	T	A	R	A	A	F	E	E	A	L	V	F	A	K	S	D	T	R	G	G	S	K	H	I	I	E	H	Q	S	V	A	D	K	L
Template Known Secondary structure														G	G	G	B		S		T	T																																										T	T	S	S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	S	.	.	.	.	G	D	A	A	M	C	K	Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.
Template Conservation
Template Sequence	I	D	C	K	I	R	L	E	T	S	R	L	L	V	W	K	A	V	T	T	L	E	D	E	A	L	E	W	K	V	K	L	E	M	A	M	Q	T	K	I	Y	T	T	D	V	A	V	E	C	V	I	D	A	M	K	A	V	G	M	K	S	Y	A	K	D	M	S	F	P	R	L	L	N	E	V	M	C	Y	P	L
Template Known Secondary structure																						T		T	T	S																																	G	G	G	G	S	T	T	S	S									T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V	L	K	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	E	G	G	N	I	G	L	R	R	R	Q	M	Q	R	V	M	A	L	E
Template Known Secondary structure	S	S	S		T	T	T	T											S	T
Template Predicted Secondary structure
Template SS confidence
	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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