Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 10 Aligned Residues 370 % Identity 27% Template c2pg0B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from geobacillus2 kaustophilus Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R	L	G	A	P	T
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		L	R	E	E	H	H	M	F	R	A	A	F	R	K	F	L	E	K	E	.	A	Y	P	H	Y	N	D	W	E	K	R	G	I	I	P	R	S	F	W	A	K	M	G	E	N	G	F	L	C	P	W	V	D	E	K	Y	G	G	L	N	A	D	F	A	Y	S	V	V	I	N	E	E	L	E	K	V	G	S	S	L
Template Known Secondary structure																					.	T	T	T	T								T	S												T	T		S	S	T	T	S		G	G	G	T																					G	G	G
Template Predicted Secondary structure																					.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		Y	V	L	Y	Q	L	P	G	G	F	N	.	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	I	Y	L	N	G	S	K	C	F	I	T	S	S	A	Y	T	P
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		V	G	I	G	L	H	N	D	I	V	T	P	Y	I	A	S	Y	G	T	E	E	Q	K	Q	K	W	L	P	K	C	V	T	G	E	L	I	T	A	I	A	M	T	E	P	G	A	G	S	D	L	A	N	I	S	T	T	A	V	K	D	G	D	Y	Y	I	V	N	G	Q	K	T	F	I	T	N	G	I	H	A	D
Template Known Secondary structure										T	T																							T	S	S								B	T	T	B	S	S		G	G	G									T	T												T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure													.	.																							.
Query SS confidence													.	.																							.
Query Sequence		Y	I	V	V	M	A	R	D	G	A	S	.	.	P	D	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V	K	E	E	F	D	H	E
Query Conservation													.	.																							.
Alig confidence													.	.																							.
Template Conservation
Template Sequence		L	I	V	V	A	C	K	T	D	P	Q	A	K	P	P	H	R	G	I	S	L	L	V	V	E	R	D	T	P	G	F	T	R	G	R	K	L	E	K	V	G	L	H	A	Q	D	T	A	E	L	F	F	Q	D	A	K	V	P	A	Y	N	L	L	G	E	E	G	K	G	F	Y	Y	L	M	E	K	L	Q	Q	E
Template Known Secondary structure									S		T	T		S	S	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	S	G	D	A	A	M	C	K	Y	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	V	V	A	I	A	A	Q	T	A	A	E	V	M	F	S	L	T	K	Q	Y	V	K	Q	R	T	A	F	G	K	R	V	S	E	F	Q	T	V	Q	F	R	L	A	E	M	A	T	E	I	A	L	G	R	T	F	V	D	R	V	I	E	E	H	M	A	G	K	Q	I	V	T	E	V	S	M	A	K	W	W
Template Known Secondary structure																														T	T			G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	E	M	A	K	R	V	A	A	E	A	M	Q	L	H	G	G	Y	G	Y	M	E	E	Y	E	I	A	R	R	Y	R	D	I	P	V	S	A	I	Y	A	G	T	N	E	M	M	K	T	I	I	A	R	Q	L
Template Known Secondary structure																	T	G	G	G	G	G		T	T	S									G	G	G	G	G	T	S	S	S													T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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