Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 9 Aligned Residues 375 % Identity 26% Template c2jifA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase; PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb) Resolution 2.0 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R	L	G	A	P
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		T	F	T	D	E	E	M	M	I	K	S	S	V	K	K	F	.	A	Q	E	Q	I	A	P	L	V	S	T	M	D	E	N	S	K	M	E	K	S	V	I	Q	G	L	F	Q	Q	G	L	M	G	I	E	V	D	P	E	Y	G	G	T	G	A	S	F	L	S	T	V	L	V	I	E	E	L	A	K	V	D	A	S
Template Known Secondary structure																		.					T	G	G	G								T													T	T	T	T	S	S	S	S		G	G	G	T																		T	T
Template Predicted Secondary structure																		.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		T	Y	V	L	Y	Q	L	P	G	G	F	N	T	.	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	I	Y	L	N	G	S	K	C	F	I	T	S	S	A	Y	T
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		V	A	V	F	C	E	I	Q	N	T	L	I	N	T	L	I	R	K	H	G	T	E	E	Q	K	A	T	Y	L	P	Q	L	T	T	E	K	V	G	S	F	C	L	S	E	A	G	A	G	S	D	S	F	A	L	K	T	R	A	D	K	E	G	D	Y	Y	V	L	N	G	S	K	M	W	I	S	S	A	E	H	A
Template Known Secondary structure												T																								T									B	T	T	B	S	S	S	G	G	G									T	T													T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V	K	E	E	F	D	H	E	R
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		G	L	F	L	V	M	A	N	V	D	P	T	I	G	Y	K	G	I	T	S	F	L	V	D	R	D	T	P	G	L	H	I	G	K	P	E	N	K	L	G	L	R	A	S	S	T	C	P	L	T	F	E	N	V	K	V	P	E	A	N	I	L	G	Q	I	G	H	G	Y	K	Y	A	I	G	S	L	N	E	G	R
Template Known Secondary structure		S								S		G	G	G	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	S	G	D	A	A	M	C	K	Y	F	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	I	A	A	Q	M	L	G	L	A	Q	G	C	F	D	Y	T	I	P	Y	I	K	E	R	I	Q	F	G	K	R	L	F	D	F	Q	G	L	Q	H	Q	V	A	H	V	A	T	Q	L	E	A	A	R	L	L	T	Y	N	A	A	R	L	L	E	A	G	K	P	F	I	K	E	A	S	M	A	K	Y	Y	A
Template Known Secondary structure																													T	T			G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V	L	K	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	I	A	G	Q	T	T	S	K	C	I	E	W	M	G	G	V	G	Y	T	K	D	Y	P	V	E	K	Y	F	R	D	A	K	I	G	T	I	Y	E	G	A	S	N	I	Q	L	N	T	I	A	K	H	I	D	A	E	Y
Template Known Secondary structure																	G	G	G	G	G	S	T	T	S	S									G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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