Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 37 Aligned Residues 364 % Identity 18% Template c2fonA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a; PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato) Resolution 2.74 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R	L	G	A	P	T	Y
Query Conservation
Alig confidence																				.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation																				.	.	.																																									.	.	.	.	.	.	.	.
Template Sequence		S	R	H	D	F	E	L	T	D	R	I	S	K	L	V	A	S	D	.	.	.	P	G	F	S	K	E	G	R	T	M	L	P	R	K	E	L	F	K	N	T	L	R	K	A	A	Y	A	W	K	R	I	I	E	L	R	L	S	Q	E	E	.	.	.	.	.	.	.	.	A	T	M	L	R	R	Y	V	D	E	P
Template Known Secondary structure		S																T		.	.	.	G	G	G			T	T	G	G	G	S																							T	T						.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.	.
		86	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150						.	.	.	.	.	.
Predicted Secondary structure									.	.																																																		.	.										.	.	.	.	.
Query SS confidence									.	.																																																		.	.										.	.	.	.	.
Query Sequence		V	L	Y	Q	L	P	G	.	.	G	F	N	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	.	.	R	R	N	G	K	I	Y	L	N	.	.	.	.	.	G	S	K	C	F	I
Query Conservation									.	.																																																		.	.										.	.	.	.	.
Alig confidence									.	.																																																		.	.										.	.	.	.	.
Template Conservation
Template Sequence		A	F	T	D	L	H	W	G	M	F	I	P	A	I	K	G	Q	G	T	D	K	Q	Q	E	K	W	L	P	L	A	Y	K	M	Q	I	I	G	C	Y	A	Q	T	E	L	G	H	G	S	N	V	Q	G	L	E	T	T	A	T	F	D	P	Q	T	D	E	F	V	I	H	S	P	T	L	T	S	S	K	W	W	P
Template Known Secondary structure			T							T									S														T	T	S	S								B	S	S		S	S		G	G	G									T	T	T	T								S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		157	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.		.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure				.																													.	.	.	.	.	.	.											.						.	.	.
Query SS confidence				.																													.	.	.	.	.	.	.											.						.	.	.
Query Sequence		T	S	.	S	A	Y	T	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	Y	T	E	W	F	V	D	.	.	.	.	.	.	.	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	.	.	.	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G
Query Conservation				.																													.	.	.	.	.	.	.											.						.	.	.
Alig confidence				.																													.	.	.	.	.	.	.											.						.	.	.
Template Conservation
Template Sequence		G	G	L	G	K	V	S	T	H	A	V	V	Y	A	R	L	I	T	D	G	K	D	Y	G	V	N	G	F	I	V	Q	L	R	S	L	E	D	H	K	P	L	P	G	V	T	V	G	D	I	G	M	K	F	G	N	G	A	Y	N	S	M	D	N	G	V	L	S	F	D	H	V	R	I	P	R	D	Q	M	L	M
Template Known Secondary structure			T	T	T	T	T		S											T	T													B		T	T	T			B		T	T										S	S	S	S	G	G	G	G	S								S	S					G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
														225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	N	G	F	N	R	V	K	E	E	F	D	H	E	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	.	.	.	.	.	.	.	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	S	Q	V	T	K	E	G	K	Y	V	Q	S	D	I	P	R	Q	L	L	Y	G	T	M	V	Y	V	R	Q	S	I	V	A	D	A	S	L	A	M	S	R	A	V	C	I	A	T	R	Y	S	A	V	R	R	Q	F	G	S	Q	N	G	G	Q	E	T	Q	V	I	D	Y	K	T	Q	Q	N	R	L	F	P
Template Known Secondary structure		S	S					T	T	S						S	S		G	G	G	T	T	T	T	T																														B		S			S	T	T					B	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.													.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	.	.	.	.	.	.	.	.	.	.	.	.	T	I	T	S	G	D	A	A	M	C	K	Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	A	S	A	Y	A	F	R	F	V	G	E	W	L	K	W	L	Y	T	D	V	T	Q	R	L	A	A	N	D	F	S	T	L	P	E	A	H	A	C	T	A	G	L	K	S	L	T	T	S	A	T	A	D	G	I	E	E	C	R	K	L	C	G	G	H	G	Y	L	C	S	S	G	L	P	E	L	F	A	V
Template Known Secondary structure																													T	T			T	T																														T	G	G	G	G	G	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V	L	K	Q	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	P	A	C	T	Y	E	G	D	N	V	V	L	Q	L	Q	V	A	R	F	L	M	K	T	I	S
Template Known Secondary structure			G	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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