Job Description P60584 Confidence 100.00% Date Thu Jan 5 12:06:55 GMT 2012 Rank 6 Aligned Residues 375 % Identity 29% Template c1ukwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of medium-chain acyl-coa dehydrogenase2 from thermus thermophilus hb8 Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	N	L	N	D	E	Q	E	L	F	V	A	G	I	R	E	L	M	A	S	E	N	W	E	A	Y	F	A	E	C	D	R	D	S	V	Y	P	E	R	F	V	K	A	L	A	D	M	G	I	D	S	L	L	I	P	E	E	H	G	G	L	D	A	G	F	V	T	L	A	A	V	W	M	E	L	G	R	L
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		I	D	F	S	L	T	E	E	Q	R	Q	L	Q	A	L	A	R	R	F	A	K	E	V	.	I	L	P	V	A	Q	E	Y	D	E	K	E	E	V	P	W	P	V	I	E	K	L	H	E	V	G	L	L	N	A	I	I	P	E	E	Y	G	G	M	G	L	K	M	L	D	E	V	I	V	G	E	E	L	A	Y	A
Template Known Secondary structure																								T	.	T	G	G	G								T													T	T		T	T	T	T	S		G	G	G	T	S
Template Predicted Secondary structure																									.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		G	A	P	T	Y	V	L	Y	Q	L	P	G	G	F	N	.	T	F	L	R	E	G	T	Q	E	Q	I	D	K	I	M	A	F	R	G	T	G	K	Q	M	W	N	S	A	I	T	E	P	G	A	G	S	D	V	G	S	L	K	T	T	Y	T	R	R	N	G	K	I	Y	L	N	G	S	K	C	F	I	T	S	S
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		C	M	G	I	Y	T	I	P	M	A	S	D	L	G	I	T	P	V	L	L	A	G	T	E	E	Q	K	E	R	F	L	R	P	L	T	E	K	P	A	L	A	A	F	A	L	S	E	P	G	N	G	S	D	A	A	A	L	K	T	R	A	I	R	Q	G	D	H	Y	V	L	N	G	T	K	M	W	I	S	N	G
Template Known Secondary structure																																	G	G	G	T	S	S	S									B	T	T	B	S	S		G	G	G									T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		A	Y	T	P	Y	I	V	V	M	A	R	D	G	A	S	P	D	K	P	V	Y	T	E	W	F	V	D	M	S	K	P	G	I	K	V	T	K	.	L	E	K	L	G	L	R	M	D	S	C	C	E	I	T	F	D	D	V	E	L	D	E	K	D	M	F	G	R	E	G	N	G	F	N	R	V	K	E	E	F	D
Query Conservation																																							.
Alig confidence																																							.
Template Conservation
Template Sequence		G	E	A	E	W	V	V	V	F	A	T	V	N	P	E	L	R	H	K	G	V	V	A	L	V	V	E	R	G	T	P	G	F	K	A	I	K	I	H	G	K	M	G	Q	R	A	S	G	T	Y	E	L	V	F	E	D	V	K	V	P	V	E	N	R	L	G	E	E	G	E	G	F	K	I	A	M	Q	T	L	N
Template Known Secondary structure		T	T										S		G	G	G	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G			S		T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	R	F	L	V	A	L	T	N	Y	G	T	A	M	C	A	F	E	D	A	A	R	Y	A	N	Q	R	V	Q	F	G	E	A	I	G	R	F	Q	L	I	Q	E	K	F	A	H	M	A	I	K	L	N	S	M	K	N	M	L	Y	E	A	A	W	K	A	D	N	G	T	I	T	S	G	D	A	A	M	C	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	R	I	P	V	A	A	G	S	V	G	V	A	R	R	A	L	D	E	A	R	K	Y	A	K	E	R	E	A	F	G	E	P	I	A	N	F	Q	A	I	Q	F	K	L	V	D	M	L	I	G	I	E	T	A	R	M	Y	T	Y	Y	A	A	W	L	A	D	Q	G	L	P	H	A	H	A	S	A	I	A	K
Template Known Secondary structure																														B	S	S	S	S	B	G	G	G	S																															T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	C	A	N	A	A	F	E	V	V	D	S	A	M	Q	V	L	G	G	V	G	I	A	G	N	H	R	I	S	R	F	W	R	D	L	R	V	D	R	V	S	G	G	S	D	E	M	Q	I	L	T	L	G	R	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	A	S	E	I	A	F	E	A	A	N	Q	A	I	Q	I	H	G	G	Y	G	Y	V	R	E	F	P	V	E	K	L	L	R	D	V	K	L	N	Q	I	Y	E	G	T	N	E	I	Q	R	L	I	I	A	R	H	I	L
Template Known Secondary structure																				G	G	G	G	G	S	T	T	S	S										G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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