Job Description P23325 Confidence 99.92% Date Thu Jan 5 11:39:22 GMT 2012 Rank 27 Aligned Residues 188 % Identity 14% Template c3ui2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic; PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43 Resolution 3.18 Å

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		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	H	V	L	Y	H	V	M	A	N	G	D	A	D	M	L	K	I	V	L	N	A	L	P	L	L	I	R	T	C	H	L	T	K	E	Q	V	L	D	L	L	K	A	K	D	F	Y	G	C	P	G	L	Y	L	A	M	Q	N	G	H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N
Query Conservation
Alig confidence																									.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation																									.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Sequence		Y	E	T	P	W	W	T	A	A	R	K	A	D	E	Q	A	L	S	Q	L	L	E	D	.	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	A	V	D	E	N	G	R	T	A	L	L	F	V	A	G	L	G	S	D	K	C	V	R	L	L	A	E	A	G	A	D	L	D	H	R	D	.
Template Known Secondary structure											T	T	T								T	T	T	T	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		B		T	T	S		B									T											T	T			T	T				.
Template Predicted Secondary structure																									.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.																.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G	L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	N	A	L	P	T	L	F	N	T	F	K	F	D	K	K	N	M	K	P	L	L	L	A	N	N	S	N	E	Y	P	G	L	F	S	A	I	Q	H	K	Q	Q	N	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	M	R	G	G	L	T	A	L	H	M	A	A	G	Y	V	R	P	E	V	V	E	A	L	V	E	L	G	A	D	I	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	E	R	G	L	T	A	L	E	L	A	R	E	I	L	K	T	T	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S											T	T											T	T			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.				690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F	E	F	G	H	R	V	I	A	E	L	I	.	.	.	L	N	T	L	N	K	M	A	E	S	F	G	F	T	D	N	P	R	Y	I	A	E	K	N	Y
Query Conservation																																																						.	.	.
Alig confidence										.	.	.	.	.	.																																							.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		K	G	N	P	M	Q	F	G	.	.	.	.	.	.	R	R	I	G	L	E	K	V	I	N	V	L	E	G	Q	V	F	E	Y	A	E	V	D	E	I	V	E	K	R	G	K	G	K	D	V	E	Y	L	V	R	W	K	D	G	G	D	C	E	W	V	K	G	V	H	V	A	E	D	V	A	K	D	Y	E	D	G
Template Known Secondary structure			S	S						.	.	.	.	.	.																														S		T	T	S								S	S	S	S							S	T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		715	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		317	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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