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Job DescriptionP23325
Confidence9.02%DateThu Jan 5 11:39:22 GMT 2012
Rank74Aligned Residues89
% Identity21%Templatec3mkqB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   388.390.........400.........410.... .....420.........430.........440.... .....450.........
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Query Sequence  LAINYGNADIVETIFNSLSETGYEGLL. . . . . . . SKKNLMHILEAKDKNGFSGLFLAISRKDKN. VVTSILNALPKLAAT
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Template Sequence  EALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL. .
Template Known Secondary structure  TT
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   684.....690.........700.........710.........720.........730.........740.........750.........760.
 
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Query Sequence  HHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . AYAVAKANGDEAAASAFLE
Template Known Secondary structure  .....................TT
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   762.......770.........780
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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