Job Description P23325 Confidence 99.97% Date Thu Jan 5 11:39:22 GMT 2012 Rank 9 Aligned Residues 242 % Identity 16% Template c3jxiA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain Resolution 2.30 Å

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		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		I	N	L	P	G	L	Y	L	A	I	N	Y	G	N	A	D	I	V	E	T	I	F	N	S	L	S	E	T	G	Y	E	G	L	L	S	K	K	N	L	M	H	I	L	E	A	K	D	K	N	G	F	S	G	L	F	L	A	I	.	.	.	S	R	K	D	K	N	V	V	T	S	I	L	N	A	L	P	K	L	A
Query Conservation																																																												.	.	.
Alig confidence																																.	.	.	.	.	.	.																						.	.	.																			.
Template Conservation																																.	.	.	.	.	.	.																																											.
Template Sequence		F	N	R	P	I	L	F	D	I	V	S	R	G	S	P	D	G	L	E	G	L	L	S	F	L	L	T	H	K	K	.	.	.	.	.	.	.	R	L	T	D	E	E	F	R	E	P	S	T	G	K	T	C	L	P	K	A	L	L	N	L	S	A	G	R	N	D	T	I	P	I	L	L	D	I	A	E	K	T	.
Template Known Secondary structure														T		G	G	G	G	T	T									T		.	.	.	.	.	.	.		T	T	S	G	G	G	S		T	T	T										T	S		B	T	T	B		T												T	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.																																											.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.								.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	H	H	L	D	N	E	Q	V	Y	K	F	L	S	A	K	N	R	T	S	S	H	V	L	Y	H	V	M	A	N	G	D	A	D	M	L	K	I	V	L	N	A	L	P	L	L	I	R	T	C	H	L	T	K	E	Q	V	L	D	L	L	K	A	K	D	F	Y	G	C	P	G	L	Y	L	A	M	Q	N	G
Query Conservation
Alig confidence		.	.	.																																												.
Template Conservation		.	.	.																																												.
Template Sequence		.	.	.	G	N	M	R	E	F	I	N	S	P	F	R	D	V	Y	Y	R	G	Q	T	A	L	H	I	A	I	E	R	R	C	K	H	Y	V	E	L	L	V	E	K	G	A	D	.	V	H	A	Q	A	R	G	R	F	F	Q	P	K	D	E	G	G	Y	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	N
Template Known Secondary structure		.	.	.	T							T			B			S	S			S	B									T	T											T	T			.	T	T									S	S	S					S			S		S	S								T	T
Template Predicted Secondary structure		.	.	.																																												.
Template SS confidence
					207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N	I	S	A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G	L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	N	A	L	P	T	L	F	N	T	F	K	F	D	K	K	N	M	K	P	L	L	L	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	P	H	I	V	H	Y	L	T	E	N	G	H	K	Q	A	D	L	R	R	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	S	R	G	N	T	V	L	H	A	L	V	A	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S	S					T	T		.	.	.	.	.	.	.	.	.	.	.	.			T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.													.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	S	N	E	Y	P	G	L	F	S	A	I	Q	H	K	Q	Q	N	V	V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F	E	F	G	H	R	V	I	A	E	L	I	L	N	T	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	T	R	E	N	T	K	F	V	T	K	M	Y	D	L	L	L	I	K	C	A	K	L	F	P	D	T	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	L	N	N	D	G	L	S	P	L	M	M	A	A	K	T	G	K	I	G	I	F	Q	H	I	I	R	R	E
Template Known Secondary structure			S	S																							T	T			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G				T	T	S										T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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