Job Description P23325 Confidence 99.88% Date Thu Jan 5 11:39:22 GMT 2012 Rank 36 Aligned Residues 146 % Identity 10% Template c3deoA_ PDB info PDB header:protein transport, membrane protein Chain: A: PDB Molecule:signal recognition particle 43 kda protein; PDBTitle: structural basis for specific substrate recognition by the2 chloroplast signal recognition particle protein cpsrp43 Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	D	F	Y	G	C	P	G	L	Y	L	A	M	Q	N	G	H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N	I	S	A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G	L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	N	A	L	P	T	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		G	S	R	T	A	G	E	G	A	M	E	Y	L	I	E	W	K	D	G	H	S	P	S	W	V	P	S	S	Y	I	A	A	D	V	V	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	T	P	W	W	T	A	A	R	K	A	D	E	Q	A	L	S	Q	L	L	E	.	D	R	D	V
Template Known Secondary structure							T	T	T									T	T									G	G	G	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T									T	T	.	T	S		T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	T	F	K	F	D	K	K	N	M	K	P	L	L	L	A	N	N	S	N	E	Y	P	G	L	F	S	A	I	Q	H	K	Q	Q	N	V	V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F	E	F
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	E	N	G	R	T	A	L	L	F	V	A	G	L	G	S	D	K	C	V	R	L	L	A	E	A	G	A	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	R	D	M	R	G	G	L	T	A	L	H	M	A	A	G	Y
Template Known Secondary structure		T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S											T											T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				S	S	S	S										T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.																.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.															.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	R	V	I	A	E	L	I	L	N	T	L	N	K	M	A	E	S	F	G	F	T	D	N	P	R	Y	I	A	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	P	E	V	V	E	A	L	V	E	L	G	A	D	I	E	V	E	D	E	R	G	L	T	A	L	E	L	A	R	E
Template Known Secondary structure		T												T			T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions