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Job DescriptionP23325
Confidence99.93%DateThu Jan 5 11:39:22 GMT 2012
Rank20Aligned Residues232
% Identity14%Templatec2nyjA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   430.........440.........450.........460.........470.........480... ......490.........500......
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Query Sequence  GFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLY. . . HVMANGDADMLKIVLNALPLLIR
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Template Sequence  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDS. . . . . . . EFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARK. . .
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   113......120.........130.........140...... ...150.........160.........170.........180..
 
   507..510.........520.........530.........540.........550.........560.........570.........580......
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Query Sequence  TCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGH
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Template Sequence  . TDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFK. . . . . . . KTKFGELPLSLAACTNQ
Template Known Secondary structure  .TT
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   183......190.........200.........210.........220.........230....... ..240.........250....
 
   587..590.........600......... 610.........620.........630.........640.........650.........660..
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Query Sequence  MNVINTIFNALPTLFNTFKFDKK. . . . NMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMDF
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Template Sequence  LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKL. . . . . . . . . . . . . . .
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   261........270.........280.........290.........300.........310.........320.....
 
   663......670.........680.........690....
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Query Sequence  WQHKAPQKYSAFELAFEFGHRVIAELILNTLN
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Template Sequence  EEITNRKGLTPLALAASSGKIGVLAYILQREI
Template Known Secondary structure  GG


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   326...330.........340.........350.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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