Job Description P23325 Confidence 99.98% Date Thu Jan 5 11:39:22 GMT 2012 Rank 8 Aligned Residues 234 % Identity 16% Template c2fo1E_ PDB info PDB header:gene regulation/signalling protein/dna Chain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna Resolution 3.12 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		427	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																																																											.	.	.	.	.	.	.
Query SS confidence																.																																																											.	.	.	.	.	.	.
Query Sequence		D	K	N	G	F	S	G	L	F	L	A	I	S	R	.	K	D	K	N	V	V	T	S	I	L	N	A	L	P	K	L	A	A	T	H	H	L	D	N	E	Q	V	Y	K	F	L	S	A	K	N	R	T	S	S	H	V	L	Y	H	V	M	A	N	G	D	A	D	M	L	K	I	V	L	.	.	.	.	.	.	.
Query Conservation																.																																																											.	.	.	.	.	.	.
Alig confidence																.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	E	N	E	E	S	P	I	K	L	H	T	E	A	A	G	S	Y	A	I	T	E	P	I	T	R	E	S	V	N	I	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	H	N	R	T	V	L	H	W	I	A	S	N	S	S	A	E	K	S	E	D	L	I	V	H	E	A	K	E	C
Template Known Secondary structure																	S	S	S				S			S	T	T	T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S											T	T			S			T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.																	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.
			499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	A	L	P	L	L	I	R	T	C	H	L	T	K	E	Q	V	L	D	L	L	K	A	K	D	F	Y	G	C	P	G	L	Y	L	A	M	Q	N	G	H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N	I	S	A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G
Query Conservation		.
Alig confidence		.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	A	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	A	X	D	C	D	E	N	T	P	L	X	L	A	V	L	A	R	R	R	R	L	V	A	Y	L	X	K	A	G	A	D	P	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	K	S	E	R	S	A
Template Known Secondary structure				T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				T	T	S											T											T	T			S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1081	.	.	.	.	.																.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.																.	.	.	.	.	.	.	1130
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.															.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.																			.	.	.	620	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	P	T	L	F	N	T	F	K	F	D	K	K	N	M	K	P	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	N	S	N	E	Y	P	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	Q	A	A	A	N	R	D	F	G	X	X	V	Y	X	L	N	S	T	K	L	K	G	D	I	E	E	L	D	R	N	G	X	T	A	L	X	I	V	A	H	N	E	G	R	D	Q	V	A	S	A	K	L	L	V	E	K	G	A	K	V	D	Y	D	G	A	A	R	K	D	S	E	K	Y	K	G	R	T	A
Template Known Secondary structure								T	T									T	T	S						T	T	S				T	T	S										S		S	T	T												T			S	S			S	G	G	G	T	S	S	S	S						T
Template Predicted Secondary structure
Template SS confidence
		1131	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	S	A	I	Q	H	K	Q	Q	N	V	V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F	E	F	G	H	R	V	I	A	E	L	I	L	N	T	L	N	K	M	A	E	S	F	G	F	T	D	N
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	Y	A	A	Q	V	S	N	X	P	I	V	K	Y	L	V	G	E	K	G	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	K	Q	D	E	D	G	K	T	P	I	X	L	A	A	Q	E	G	R	I	E	V	V	X	Y	L	I	Q	Q	G	A	S	V	E	A	V	D	A	T	D	H	T
Template Known Secondary structure							S	S													S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				T	T												T											T	T			S	S				S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1211	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.															.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	Y	I	A	E	K	N	Y	M	E	A	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	Q	L	A	Q	A	N	N	H	H	N	I	V	D
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		1277	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions