Job Description P23325 Confidence 99.93% Date Thu Jan 5 11:39:22 GMT 2012 Rank 25 Aligned Residues 198 % Identity 18% Template c2f8xK_ PDB info PDB header:transcription/dna Chain: K: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence Resolution 3.25 Å

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		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	L	Y	H	V	M	A	N	G	D	A	D	M	L	K	I	V	L	N	A	L	P	L	L	I	R	T	C	H	L	T	K	E	Q	V	L	D	L	L	K	A	K	D	F	Y	G	C	P	G	L	Y	L	A	M	Q	N	G	H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N	I	S
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Sequence		T	P	L	M	I	A	S	C	S	A	V	I	S	D	F	I	Y	S	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	T	D	R	T	G	E	T	A	L	H	L	A	A	R	Y	S	R	S	D	A	A	K	R	L	L	E	A	S	A	D	A	N	.	.	.	.	.	.
Template Known Secondary structure																					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S											T	T											T	T			T	T	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		1884	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.																					.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G	L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	N	A	L	P	T	L	F	N	T	F	K	F	D	K	K	N	M	K	P	L	L	L	A	N	N	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	I	Q	D	N	M	G	R	T	P	L	H	A	A	V	S	A	D	A	Q	G	V	F	Q	I	L	I	R	N	R	A	T	D	L	D	A	R	M	H	D	G	T	T	P	L	I	L	A	A	R	L	A	V	E	G	M	L	E	D	L	I	N	S	H	A	D	V	N	A	V	D	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				T	T	S										T	T											S	S	S			T	T				T	T											T	T		T	T								T	T			S	S				T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											1957	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.
			622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	Y	P	G	L	F	S	A	I	Q	H	K	Q	Q	N	V	V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F	E	F	G	H	R	V	I	A	E	L	I	L	N	T	L	N	K	M	A	E	S	F
Query Conservation		.
Alig confidence		.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	K	S	A	L	H	W	A	A	A	V	N	N	V	D	A	A	V	V	L	L	K	N	G	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	M	Q	N	N	R	E	E	T	P	L	F	L	A	A	R	E	G	S	Y	E	T	A	K	V	L	L	D	H	F	A	N	R	D	I	T	D
Template Known Secondary structure		T											T	T											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				T	T												T											T	T			T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2028	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.																.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	T	D	N	P	R	Y	I	A	E	K	N	Y	M	E	A	L	L	K	K	A	S	P	H	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	D	R	L	P	R	D	I	A	Q	E	R	M	H	H	D	I	V	R	L	L	D	E	Y	N	L
Template Known Secondary structure		T	T	S										T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		2093	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions