Job Description P23325 Confidence 99.96% Date Thu Jan 5 11:39:22 GMT 2012 Rank 15 Aligned Residues 244 % Identity 17% Template c2f37B_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2 Resolution 1.70 Å

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		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		Y	N	S	I	N	L	P	G	L	Y	L	A	I	N	Y	G	N	A	D	I	V	E	T	I	F	N	S	L	S	E	T	G	Y	E	G	L	L	S	K	K	N	L	M	H	I	L	E	A	K	D	K	N	G	F	S	G	L	F	L	A	I	.	.	.	S	R	K	D	K	N	V	V	T	S	I	L	N	A	L	P
Query Conservation																																																															.	.	.
Alig confidence																																			.	.	.	.	.	.	.																						.	.	.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		P	N	R	F	D	R	D	R	L	F	N	A	V	S	R	G	V	P	E	D	L	A	G	L	P	E	Y	L	S	K	T	S	K	.	.	.	.	.	.	.	Y	L	T	D	S	E	Y	T	E	G	S	T	G	K	T	C	L	X	K	A	V	L	N	L	K	D	G	V	N	A	C	I	L	P	L	L	Q	I	D	R
Template Known Secondary structure			S														T		G	G	G	G	T	T									T		.	.	.	.	.	.	.		T	T	S	G	G	G	S	B	T	T	T	T	B									T		B	T	T	B		T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	A	T	H	H	L	D	N	E	Q	V	Y	K	F	L	S	A	K	N	R	T	S	S	H	V	L	Y	H	V	M	A	N	G	D	A	D	M	L	K	I	V	L	N	A	L	P	L	L	I	R	T	C	H	L	T	K	E	Q	V	L	D	L	L	K	A	K	D	F	Y	G	C	P	G	L	Y	L	A	M
Query Conservation
Alig confidence				.	.	.	.																																																			.	.
Template Conservation				.	.	.	.																																																			.	.
Template Sequence		D	S	.	.	.	.	G	N	P	Q	P	L	V	N	A	Q	C	T	D	D	Y	Y	R	G	H	S	A	L	H	I	A	I	E	K	R	S	L	Q	C	V	K	L	L	V	E	N	G	A	N	V	H	A	R	A	C	G	.	.	R	F	F	Q	K	G	Q	G	T	C	F	Y	F	G	E	L	P	L	S	L	A	A
Template Known Secondary structure				.	.	.	.	T		S	S		G	G	G		B			S	T	T	T	T	T		B								T	T											T	T			T	T					S	.	.	G	G	G		T	T	S	S	S	S			S		S	S
Template Predicted Secondary structure				.	.	.	.																																																			.	.
Template SS confidence
		144	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	G	H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N	I	S	A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G	L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	N	A	L	P	T	L	F	N	T	F	K	F	D	K	K	N	M	K	P	L
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	K	Q	W	D	V	V	S	Y	L	L	E	N	P	H	Q	P	A	S	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	T	D	S	Q	G	N	T	V	L	H	A	L	V	X	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T												S	S					T	T		.	.	.	.	.	.	.	.	.	.	.	.			T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240													.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	N	N	S	N	E	Y	P	G	L	F	S	A	I	Q	H	K	Q	Q	N	V	V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F	E	F	G	H	R	V	I	A	E	L	I	L	N	T	L
Query Conservation
Alig confidence		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	D	N	S	A	E	N	I	A	L	V	T	S	X	Y	D	G	L	L	Q	A	G	A	R	L	C	P	T	V	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	I	R	N	L	Q	D	L	T	P	L	K	L	A	A	K	E	G	K	I	E	I	F	R	H	I	L	Q	R	E
Template Known Secondary structure		.	.	.		S																							S	T	T			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G				T	T	S										T	T												T
Template Predicted Secondary structure		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.																.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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