Job Description P23325 Confidence 99.81% Date Thu Jan 5 11:39:22 GMT 2012 Rank 45 Aligned Residues 126 % Identity 17% Template c1ympB_ PDB info PDB header:transcription Chain: B: PDB Molecule:notch 1 protein; PDBTitle: the crystal structure of a partial mouse notch-1 ankyrin2 domain: repeats 4 through 7 preserve an ankyrin fold Resolution 2.20 Å

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		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	K	D	F	Y	G	C	P	G	L	Y	L	A	M	Q	N	G	H	S	D	I	V	K	V	I	L	E	A	L	P	S	L	A	Q	E	I	N	I	S	A	S	D	I	V	D	L	L	T	A	K	S	L	A	R	D	T	G	L	F	M	A	M	Q	R	G	H	M	N	V	I	N	T	I	F	N	A	L	P
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	A	R	M	H	D	G	T	T	P	L	I	L	A	A	R	L	A	L	E	G	M	L	E	D	L	I	N	S	H	A	D	V	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	D	L	G	K	S	A	L	H	W	A	A	A	V	N	N	V	D	A	A	V	V	L	L	K	N	G	A
Template Known Secondary structure		T					T	T	S											T											T	T			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S										T	T											T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	N	T	F	K	F	D	K	K	N	M	K	P	L	L	L	A	N	N	S	N	E	Y	P	G	L	F	S	A	I	Q	H	K	Q	Q	N	V	V	E	T	V	Y	L	A	L	S	D	H	A	R	L	F	G	F	T	A	E	D	I	M	D	F	W	Q	H	K	A	P	Q	K	Y	S	A	F	E	L	A	F
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	N	K	E	E	T	P	L	F	L	A	A	R	E	G	S	Y	E	T	A	K	V	L	L	D	H	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	I	T	D	H	M	D	R	L	P	R	D	I	A	Q
Template Known Secondary structure			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T												T											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.																180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	G	H	R	V	I	A	E	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	M	H	H	D	I	V	R	L	L
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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