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Job DescriptionP23325
Confidence99.97%DateThu Jan 5 11:39:22 GMT 2012
Rank10Aligned Residues205
% Identity13%Templatec1sw6A_
PDB info PDB header:transcription regulationChain: A: PDB Molecule:regulatory protein swi6; PDBTitle: s. cerevisiae swi6 ankyrin-repeat fragment
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   433......440.........450.........460.........470.........480.........490.........500.........510..
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Query Sequence  GLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTK
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Template Sequence  RLLFSFDSLLQEVNDAFPNTQLNLNIPV. . . . . . . . . . . . . . DEHGNTPLHWLTSIANLELVKHLVKHGSN. . . . . . . . .
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   256...260.........270.........280... ......290.........300.........310..
 
   513......520.........530.........540. ........550.........560.........570.........580........
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Query Sequence  EQVLDLLKAKDFYGCPGLYLAMQNGHSDI. . . . VKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMN
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Template Sequence  . . . . . . RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI. . . . . . . . . . . . . . . LEDSMNRTILHHIIITSGMT
Template Known Secondary structure  ......TTB

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SSTT
GGGGG...............
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   344.....350.........360.........370.........380.. .......390.........400..
 
   589590.........600.........610.........620.........630.........640.........650.........660........
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Query Sequence  VINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMDFWQHKAP
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Template Sequence  GCSAAAKYYLDIL. . . . . . . . . . . . . MGWIVKKQNRPIQSGDSILENLDLKWIIANM. . . . . . . . . . . . . . . . . LNAQDS
Template Known Secondary structure  T
.............GGG




ST.................TT


T
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   403......410..... ....420.........430.........440...... ...450..
 
   669670.........680.........690.........700.........710.
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Query Sequence  QKYSAFELAFEFGHRVIAELILNTLNKMAESFGFTDNPRYIAE
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Template Sequence  NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA
Template Known Secondary structure  TS



TT

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GGGGT
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   469470.........480.........490.........500.........510.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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