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Job DescriptionP23325
Confidence99.92%DateThu Jan 5 11:39:22 GMT 2012
Rank28Aligned Residues220
% Identity19%Templatec1oy3D_
PDB info PDB header:dna binding proteinChain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   422.......430.........440.........450.........460.........470.........480.........490.........500.
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Query Sequence  ILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNAL
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Template Sequence  VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY. . . . . . . . . . . . LDLQNDLGQTALHLAAILGEASTVEKLYAAG
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TT


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   50.........60.........70.........80...... ...90.........100.........110.......
 
   502.......510.........520.........530.........540.........550.........560.........570.........580.
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Query Sequence  PLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMA
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Template Sequence  AG. . . . . . . . . . . . . . . VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP. . . RDADEDWRLQLEAENYDGHTPLHVA
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GGGGTT


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   118. 120.........130.........140.........150.... .....160.........170.........
 
   582.......590.........600.........610.........620.........630.........640.........650.........660.
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Query Sequence  MQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMD
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Template Sequence  VIHKDAEMVRLLRDAGADLNKP. . . . . . . . . . . . . . EPTCGRTPLHLAVEAQAASVLELLLKAGAD. . . . . . . . . . . . . .
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TT

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   215....220.........230...... ...240.........250.........260......
 
   662.......670.........680.........690.........700.
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Query Sequence  FWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAESFG
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Template Sequence  . PTARMYGGRTPLGSALLRPNPILARLLRAHGAP. EPEDG
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   267..270.........280.........290......... 300....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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