 |
Job Description | P07363 | Confidence | 99.52% | Date | Thu Jan 5 11:00:16 GMT 2012 |
Rank | 35 | Aligned Residues | 136 |
% Identity | 17% | Template | c2qdlB_ |
PDB info |
PDB header:signaling protein | Chain: B: PDB Molecule:chemotaxis signal transduction protein; |
PDBTitle: crystal structure of scaffolding protein ttchew from2 thermoanaerobacter tengcongensis
|
Resolution | 2.20 Å |
|
 |
  |   |
513 | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | |
|
|
|
550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
| . | . | . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | G | M | S | V | R | V | A | D | E | V | F | I | L | P | L | N | A | V | M | E | S | L | Q | P | R | E | A | D | L | H | P | L | A | G | G | E | . |
. |
. |
. |
R | V | L | E | V | R | G | E | Y | L | P | I | V | E | L | W | K | V | F | N | V | A | G | A | K | T | E | A | T | Q | G | I | V | V | I | L | Q | S | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |
|
|   |   |   |
|
|
|
|   |   |   |
|   |
|
|   |   |   |   |   | . | . |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|
|
|
|   |
|   |   |   |
|   |   |   |   | . |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |
Template Sequence |   |
K | I | V | V | F | S | L | A | E | E | L | Y | G | L | D | I | F | D | V | H | E | V | V | K | D | V | S | . |
. |
I | T | K | I | P | E | T | P | E | F | I | E | G | I | I | N | L | R | G | K | I | I | P | V | I | D | L | K | K | R | F | G | I | G | K | . |
R | G | K | S | K | D | S | R | I | I | I | V | E | I | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |  |  |  |  |  |  | G | G | G |  |  |  |  |  |
| S |
|
| . | . |
| B |
|
| T | T |
|
| T | T |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| . |
| S |
|
| T | T |
|  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
  |   |
589 | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | |
|
|
. | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  | . | . | . |  |  |  |  |
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | R | Y | A | L | L | V | D | Q | L | I | G | Q | H | Q | V | . |
. |
. |
V | V | K | N | L | E | S | N | Y | R | K | V | P | G | I | S | A | A | T | I | L | G | D | G | S | V | A | L | I | V | D | V | S | A | L | Q | A | I | N | R | E | Q | R | M | A | N |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | Q | K | A | G | L | I | V | D | A | V | H | E | V | I | P | I | D | E | N | S | I | E | P | P | P | P | V | T | T | I | D | T | A | F | V | E | G | I | A | K | T | D | D | K | M | I | I | I | I | K | L | H | F | L | F | E | V | N | G | K | E | M | L | L | N |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |
| G | G | G |  |  |
|
|
| S | S |
| S | S |
| G | G | G |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |
|
| T | T | T | T |  |  | T | T |  |  | S | S |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|