Job Description P0A705 Confidence 99.97% Date Thu Jan 5 11:04:22 GMT 2012 Rank 21 Aligned Residues 226 % Identity 24% Template c3mcaA_ PDB info PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		V	M	S	D	R	D	T	G	A	A	A	E	P	R	A	P	V	.	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R
Query Conservation																			.
Alig confidence																			.																			.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	S	V	P	E	I	F	E	Q	S	N	P	K	P	V	V	H	L	V	V	T	G	H	V	D	S	G	K	S	T	M	L	G	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	E	L	G	E	I	.	.	.	.	.	.	.	.	.	.	I	G	D	A	P	G	H	R	D	F	I	S	G	M
Template Known Secondary structure			S					G	G	G	G	S														S	S	S	T									.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.						S	S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.														.	.	200	.	.	.	.											.	.	.	.	.	210	.	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.				510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530
Predicted Secondary structure																																							.																		.	.	.																		.
Query SS confidence																																							.																		.	.	.																		.
Query Sequence		A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	.	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	.	.	.	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	.	E	S	Q	F
Query Conservation																																							.																		.	.	.																		.
Alig confidence																																							.																		.	.	.																		.
Template Conservation
Template Sequence		I	A	A	V	L	V	V	D	S	S	Q	N	N	F	E	R	G	F	L	E	N	G	Q	T	R	E	H	A	Y	L	L	R	A	L	G	I	S	E	I	V	V	S	V	N	K	L	D	L	M	S	W	S	E	D	R	F	Q	E	I	K	N	I	V	S	D	F	L	I	K	M	V	G	F	K	T	S	N	V	H	F
Template Known Secondary structure						S									S	S	T	T	S		S		S	S											S	S											G	G	G	G	T	T																	T	T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.															.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	V	S	A	K	A	G	T	G	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F	L	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.																										.
Template Conservation																																			.	.	.																										.
Template Sequence		V	P	I	S	A	I	S	G	T	N	L	I	Q	K	D	S	S	D	L	Y	K	W	Y	K	G	P	T	L	L	S	A	L	D	.	.	.	Q	L	V	P	P	E	K	P	Y	R	K	P	L	R	L	S	I	D	D	V	Y	R	S	P	R	.	S	V	T	V	T	G	R	V	E	A	G	N	V	Q	V	N	Q	V
Template Known Secondary structure						S	S	S		S	S	S		S					G	G	G	G	T			S									.	.	.	T	S				S		T	T	T	S													T	T	.											S				T	T
Template Predicted Secondary structure																																			.	.	.																										.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.				.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		597	.	.	600	.	.			.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		V	L	C	G	F	E	.	.	Y	G	R	V	R	A	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		L	Y	D	V	S	S	Q	E	D	A	Y	V	K	N	V	I	R	N	S	D	P	S	S	T	W	A	V	A	G	D	T	V	T	L	Q
Template Known Secondary structure					T	T	T	T											S	S	S		S						T	T
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions