Job Description P0A705 Confidence 100.00% Date Thu Jan 5 11:04:22 GMT 2012 Rank 2 Aligned Residues 494 % Identity 45% Template c3izyP_ PDB info PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 Resolution 10.80 Å

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		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	.	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		I	P	R	S	P	V	V	T	I	M	G	H	V	D	H	G	K	T	T	L	L	D	K	L	R	K	T	Q	V	A	A	M	E	A	G	G	I	T	Q	H	I	G	A	F	L	V	S	L	P	S	G	E	K	I	T	F	L	D	T	P	G	H	A	A	F	S	A	M	R	A	R	G	T	Q	V	T	D	I	V	I
Template Known Secondary structure							B						S	T	T	T	T																S	S	S			B				T	T	S			B		S	S		S	S			B					S	S	S			T	T	T	S	B	B	S	S	S	B	S	B	S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	V	A	A	D	D	G	V	M	K	Q	T	V	E	S	I	Q	H	A	K	D	A	H	V	P	I	V	L	A	I	N	K	C	D	K	A	E	A	D	P	E	K	V	K	K	E	L	L	A	Y	D	V	V	C	E	D	Y	G	G	D	V	Q	A	V	H	V	S	A	L	T	G	E	N	M	M	A	L	A	E
Template Known Secondary structure					B	S	S	S															T	T	T								B	S	G	G	G	T	T	T	S			S	S	S	S					T	T	S					S	S	S	S								S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F	L	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I	V	L	C	G	F	E	Y	G	R	V	R	A	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	I	A	L	A	E	M	L	E	L	K	A	D	P	T	G	A	V	E	G	T	V	I	E	S	F	T	D	K	G	R	G	P	V	T	T	A	I	I	Q	R	G	T	L	R	K	G	S	I	L	V	A	G	K	S	W	A	K	V	R	L	M	F	D	E	N	G	R	A	V	N	E	A	Y	P	S	M	P	V
Template Known Secondary structure								T	T							S	S	S	S												T	T															S	S							S	S																S			S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.																																						.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	L	G	L	S	G	V	P	A	A	G	D	E	V	T	V	V	R	D	E	K	K	A	R	E	V	A	L	Y	R	Q	G	K	F	R	E	V	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	Q
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	I	G	W	R	D	L	P	S	A	G	D	E	I	L	E	V	E	S	E	P	R	A	R	E	V	V	D	W	R	K	Y	E	Q	E	Q	E	K	N	K	E	D	L	K	L	I	E	E	K	R	K	E	H	Q	E	A	H	R	K	D	R	E	K	Y	G	T	V	H	W	K	E	R	S	Y	I	K	Y	R	E
Template Known Secondary structure					S	S								S	S			S			S	S							S			S	S	S					T	G	G	G	B	S	S														S	S	T	T					S		S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.		.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		Q	K	S	K	L	E	N	M	F	A	N	M	T	E	G	E	V	H	E	V	N	I	V	L	K	A	D	V	Q	G	S	V	E	A	I	S	D	S	L	L	K	L	.	S	T	D	E	V	K	V	K	I	I	G	S	G	V	G	G	I	T	E	T	D	A	T	L	A	A	A	S	N	A	I	L	V	G	F	N	V
Query Conservation																																												.
Alig confidence																																												.
Template Conservation
Template Sequence		K	R	Q	Q	Q	P	L	K	P	K	E	K	L	E	R	D	S	N	V	L	P	V	I	V	K	G	D	V	D	G	S	V	E	A	I	L	N	V	M	D	T	Y	D	A	S	H	E	C	E	L	D	L	V	H	F	G	V	G	D	I	S	E	N	D	V	N	L	A	E	T	F	H	G	V	I	Y	G	F	N	V
Template Known Secondary structure							T	T	T	T													B				B																				S	S					B	S				B	S		B												S						S	S
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.				.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		R	A	D	A	S	A	R	K	V	I	E	A	E	S	L	D	L	R	Y	Y	S	V	I	Y	N	L	I	D	E	V	K	A	A	M	S	G	M	L	S	P	E	L	K	Q	Q	I	I	G	L	A	E	V	R	D	V	F	K	S	P	.	.	.	K	F	G	A	I	A	G	C	M	V	T	E	G	V	V	K	R	H
Query Conservation																																																													.	.	.
Alig confidence																																																													.	.	.
Template Conservation
Template Sequence		N	A	G	N	V	I	Q	Q	L	A	A	K	K	G	V	K	I	K	L	H	K	I	I	Y	R	L	I	E	D	L	Q	E	E	L	S	S	R	L	P	C	I	V	E	E	H	P	I	G	E	A	S	I	L	A	T	F	S	I	T	E	G	K	K	K	V	P	V	A	G	C	R	V	Q	K	G	Q	I	E	K	Q
Template Known Secondary structure			B												T				B		S		S	S			S									S	S	S	S	S		S	S	S				S	S									S	S		S	S	S			S									S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		826	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.		870	.	.	.	.	.	.	.	.	.	880	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		N	P	I	R	V	L	R	D	N	V	V	I	Y	E	G	E	L	E	S	L	R	R	F	K	D	D	V	N	E	V	R	N	G	M	E	C	G	I	G	V	K	N	Y	N	.	D	V	R	T	G	D	V	I	E	V	F	E
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		K	K	F	K	L	I	R	N	G	H	V	I	W	K	G	S	L	I	S	L	K	H	H	K	D	D	T	S	V	V	K	T	G	M	D	C	G	L	S	L	D	E	E	K	I	E	F	K	V	G	D	A	I	I	C	Y	E
Template Known Secondary structure		S						S	S	S	S													S	S				S				T	T							S	S	S	S		S	S		S
Template Predicted Secondary structure
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.