Job Description P0A705 Confidence 100.00% Date Thu Jan 5 11:04:22 GMT 2012 Rank 5 Aligned Residues 308 % Identity 20% Template c3izq1_ PDB info PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Resolution 9.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.
Predicted Secondary structure																					.																																																									.
Query SS confidence																					.																																																									.
Query Sequence		G	E	L	A	N	K	M	A	V	K	G	S	Q	V	I	K	A	M	M	.	K	L	G	A	M	A	T	I	N	Q	V	I	D	Q	E	T	A	Q	L	V	A	E	E	M	G	H	K	V	I	L	R	R	E	N	E	L	E	E	A	V	M	S	D	R	D	T	G	A	A	A	E	P	R	A	P	V	.	V	T	I
Query Conservation																					.																																																									.
Alig confidence																					.																													.	.	.																										.
Template Conservation																																																		.	.	.
Template Sequence		G	E	F	D	D	Y	L	N	D	D	E	Y	E	L	M	N	E	V	F	P	T	L	K	A	Q	L	Q	D	Y	Q	G	W	D	N	L	S	L	K	L	A	L	F	D	N	N	F	D	L	.	.	.	E	S	T	L	A	E	L	K	K	T	L	K	K	K	K	T	P	V	K	S	A	L	P	H	L	S	F	V	V
Template Known Secondary structure									T	T							T			S	T	T													S	S									T	T	T		S	.	.	.	S									T	T		S	S	S
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.													.	.	.	.	.	.	.	.	420	.	.																				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	R	S	T	K	V	A	S	G	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	H	V	D	A	G	K	S	T	L	M	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	E	S	E	T	M	G	K	S	S	F	K	F	A	W	I	M	D	Q	T	N	E	E	R	E	R	G	V	T	V	S	I	C	T	S	H	F	S	T	H	R	A	N	F	T	I	V	D	A
Template Known Secondary structure					S	S	S											S		S	S		S												S	S		S	S	S	S			S	S	S												T	T	T			S		S							S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.								.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.				510	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																.																		.	.	.
Query SS confidence																																		.	.	.	.	.	.	.																.																		.	.	.
Query Sequence		P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	.	.	.	.	.	.	.	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	.	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	.	.	.	V	K	N	E	L
Query Conservation																																		.	.	.	.	.	.	.																.																		.	.	.
Alig confidence																																		.	.	.	.	.	.	.																.																		.	.	.
Template Conservation
Template Sequence		P	G	H	R	D	F	V	P	N	A	I	M	G	I	S	Q	A	D	M	A	I	L	C	V	D	C	S	T	N	A	F	E	S	G	F	D	L	D	G	Q	T	K	E	H	M	L	L	A	S	S	L	G	I	H	N	L	I	I	A	M	N	K	M	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L
Template Known Secondary structure			S	S	S							T	T	T	S	S			S									S						T	T			T	T	S											T	T	T											T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.																			.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	L	D	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F	L	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	M	S	T	L	E	N	A	A	F	K	I	S	K	E	N	E	G	I	N	K	D	D	P	F	L	F	S	V	L	E	I	I	P	S	K
Template Known Secondary structure									T			G	G	G								T	T	T		T	T	T	S	S		T	T	S		T	T			S			S								T	T	S							S	S	S			S			S													S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
			575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.			.	.	.	.	.	.	.	610	.								.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																													.	.										.	.	.	.	.	.	.
Query SS confidence		.																													.	.										.	.	.	.	.	.	.
Query Sequence		.	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I	V	L	C	G	F	E	.	.	Y	G	R	V	R	A	M	R	N	.	.	.	.	.	.	.	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L
Query Conservation		.																													.	.										.	.	.	.	.	.	.
Alig confidence		.																													.	.										.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	S	N	D	L	A	L	V	S	G	K	L	E	S	G	S	I	Q	P	G	E	S	L	T	I	Y	P	S	E	Q	S	C	I	V	D	K	I	Q	V	G	S	Q	Q	G	Q	S	T	N	H	E	E	T	D	V	A	I	K	G	D	F	V	T	L	K
Template Known Secondary structure		S	S		S	S	S	S									S				T	T						T	T	T	T											S	S			S		S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions