Job Description P0A705 Confidence 99.69% Date Thu Jan 5 11:04:22 GMT 2012 Rank 47 Aligned Residues 169 % Identity 27% Template c3ievA_ PDB info PDB header:nucleotide binding protein/rna Chain: A: PDB Molecule:gtp-binding protein era; PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna Resolution 1.90 Å

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		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.											.	.	450	.	.	.	.	.
Predicted Secondary structure																																	.																					.										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																					.										.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	.	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	.	M	I	T	F	L	D	T	P	G	.	.	.	.	.	.	.	.	.	.	H	A	A	F	T	S	M	R
Query Conservation																																	.																					.										.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.																					.										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	M	K	V	G	Y	V	A	I	V	G	K	P	N	V	G	K	S	T	L	L	N	N	L	L	G	T	K	V	S	I	I	S	P	K	A	G	T	T	R	M	R	V	L	G	V	K	N	I	P	N	E	A	Q	I	I	F	L	D	T	P	G	I	Y	E	P	K	K	S	D	V	L	G	H	S	M	V	E	I	A
Template Known Secondary structure													S	T	T	S	S										T	S			S				S	S	S					S									T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																														.																				.	.
Query SS confidence																														.																				.	.
Query Sequence		A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	.	Q	H	A	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	.	.	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H
Query Conservation																														.																				.	.
Alig confidence																														.																				.	.																.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		K	Q	S	L	E	E	A	D	V	I	L	F	M	I	D	A	T	E	G	W	R	P	R	D	E	E	I	Y	Q	N	F	I	K	P	L	N	K	P	V	I	V	V	I	N	K	I	D	K	I	G	P	A	K	N	V	L	P	L	I	D	E	I	H	K	K	.	.	.	.	.	.	H	P	E	L	T	E	I	V	P
Template Known Secondary structure									S								T	T	T	B	S												T	G	G	G											G	G	G	S	S	S	G	G	G	G											.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	A	L	K	G	A	N	L	D	E	L	V	K	T	I	L	K	Y	L	P	E	G	E	P	L	F	P	E	D
Template Known Secondary structure			B	T	T	T	T	B	S												S		B				S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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