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Job DescriptionP0A705
Confidence100.00%DateThu Jan 5 11:04:22 GMT 2012
Rank7Aligned Residues427
% Identity25%Templatec3degC_
PDB info PDB header:ribosomeChain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
ResolutionNULL Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VTIMGHVDHGKTSLLDYIRSTKVASGEAG. . . . . . . . . . . . . . . GITQHIGAYHVETE. . . . . NGMITFLDTPGHAAFTS
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Template Sequence  FSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSY
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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   454.....460.........470.........480.........490.........500.........510.........520........ .530..
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Query Sequence  MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGES. QFVH
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Template Sequence  EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDI. . . . . . VGIDATDAVR
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   87..90.........100.........110.........120.........130.........140.........150 .........160
 
   533......540.........550.........560.........570.........580.........590.........600....... .
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Query Sequence  VSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVR. . . . A
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Template Sequence  CSAKTGVGVQDVLERLVR. . DIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLG
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   161........170........ .180.........190.........200.........210.........220.........230........
 
   609610.........620......... 630....... ..640.........650.........660.........670.........680.....
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Query Sequence  MRNELGQEVLEAGPSIPVEIL. GLSGVPAA. . GDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGE
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Template Sequence  IFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . PAEKALPGFK
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   239240.........250.........260.........270......... 280.........
 
   686...690.........700.........710.........720.........730.........740....... ..750.........760.
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Query Sequence  . . VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFN. . VRADASARKVIEAE
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Template Sequence  KVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGF. . . . . . . . . . GFRCGFLGLLHMEIIQERLEREY
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SSSGGGTT
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   290.........300.........310.........320.........330...... ...340.........350.........
 
   762...... .770.. .......780.........790.. .......800...... ...810.........820..
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Query Sequence  SLDLRYY. . SVIY. . . . . . . . . NLIDEVKAAMSGMLSPELKQ. QIIGLAEVRDVFKS. . . . . . . PKFGAIAGCMVTEGVV
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Template Sequence  DLDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNM. . . . . . .
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   360.........370.........380.........390.........400.........410.........420.........430..
 
   823......830.........840.. .......850.........860.........870.........880...
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Query Sequence  KRHNPIRVLRDNVVIYEGEL. . . ESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEII
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Template Sequence  . . . . . . . VYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGY. . ASLDYNFKRFQASDMVRVDVLI
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   433......440.........450.........460..... ....470.........480.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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