Job Description P0A705 Confidence 98.46% Date Thu Jan 5 11:04:22 GMT 2012 Rank 241 Aligned Residues 152 % Identity 17% Template c3cphA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein sec4; PDBTitle: crystal structure of sec4 in complex with rab-gdi Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.			.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	.	.	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		I	L	L	I	G	D	S	G	V	G	K	S	C	L	L	V	R	F	V	E	D	K	F	N	P	S	F	I	T	T	I	G	I	D	F	K	I	K	T	V	D	I	N	G	K	K	V	K	L	Q	L	W	D	T	A	G	Q	E	R	F	R	T	I	T	T	A	Y	Y	R	G	A	M	G	I	I	L	V	Y	D	V
Template Known Secondary structure							S	T	T	S	S																S	S	S				S											T	T											T	T	G	G	G	G	T								T	T		S								T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	.	.	.	.	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		T	D	E	R	T	F	T	N	I	K	Q	W	F	K	T	V	N	E	H	A	N	D	E	A	Q	L	L	L	V	G	N	K	S	D	M	E	T	R	V	V	T	A	D	Q	G	E	A	L	A	K	E	L	G	I	.	.	.	.	.	.	.	P	F	I	E	S	S	A	K	N	D	D	N	V	N	E	I	F	F	T
Template Known Secondary structure		T							T												T	T	T		S									T	T		S	S			S													T		.	.	.	.	.	.	.						B	T	T	T	T	B	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		548	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	K	L	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions