Job Description P0A705 Confidence 99.31% Date Thu Jan 5 11:04:22 GMT 2012 Rank 85 Aligned Residues 153 % Identity 16% Template c3c5hA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap) Resolution 1.80 Å

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		394	.	.	.	.	.	400	.	.										.	.	.	.	.	.	.	410	.	.	.												.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.								.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query Sequence		V	T	I	M	G	H	V	D	H	.	.	.	.	.	.	.	.	.	G	K	T	S	L	L	D	Y	I	R	S	.	.	.	.	.	.	.	.	.	.	.	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	.	.	.	.	.	.	.	D	T	P
Query Conservation											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	V	V	G	L	S	G	T	E	K	E	K	G	Q	C	G	I	G	K	S	C	L	C	N	R	F	V	R	P	S	A	D	E	F	H	L	D	H	T	S	V	L	S	T	S	D	F	G	G	R	V	V	N	N	D	H	F	L	Y	W	G	E	V	S	K	M	H	I	V	E	Q	T	E	F	I	D	D	Q	T
Template Known Secondary structure							S				T	T	T	T	T	T				S												S	T	T	T			S												T	S	T	T	T	T	T		S																					T	T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.																																						.	.	.	.	.	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Query Sequence		G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	V	L	V	V	A	A	D	D	G	.	.	.	V	M	P	Q	T	I	E	A	I	Q	H	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		F	Q	P	H	R	S	T	A	L	Q	P	Y	I	K	R	A	A	A	T	K	L	A	S	A	E	K	L	M	Y	F	C	T	D	Q	L	G	L	E	Q	D	F	E	Q	K	Q	M	P	D	G	K	L	L	V	D	G	F	L	L	G	I	D	V	S	R	N	F	D	D	Q	L	K	F	V	S	N	L	Y	N	Q	L
Template Known Secondary structure			S	B	T	T	G	G	G									T		S					T	T		B					G	G	G	T	T		G	G	G	S				B		G	G	G														B
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L	L	Q	A	E
Query Conservation
Alig confidence																				.	.	.											.	.							.	.
Template Conservation																				.	.	.											.	.							.	.
Template Sequence		A	K	T	K	K	P	I	V	V	V	L	T	K	C	D	E	G	V	.	.	.	E	R	Y	I	R	D	A	H	T	F	.	.	A	L	S	K	K	N	.	.	L	Q	V	V	E	T	S	A	R	S	N	V	N	V	D	L	A	F	S	T	L	V	Q	L	I	D
Template Known Secondary structure				T	T										G	G	G	B		.	.	.											.	.			T	S	S	S	.	.							B	T	T	T	T	B	S
Template Predicted Secondary structure																				.	.	.											.	.							.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions