Job Description P0A705 Confidence 98.87% Date Thu Jan 5 11:04:22 GMT 2012 Rank 156 Aligned Residues 147 % Identity 18% Template c3bbpA_ PDB info PDB header:protein transport/splicing Chain: A: PDB Molecule:ras-related protein rab-6a; PDBTitle: rab6-gtp:gcc185 rab binding domain complex Resolution 3.00 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	.	.	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence		L	V	F	L	G	E	Q	S	V	G	K	T	S	L	I	T	R	F	M	Y	D	S	F	D	N	T	Y	Q	A	T	I	G	I	D	F	L	S	K	T	M	Y	L	E	D	R	T	V	R	L	Q	L	W	D	T	A	G	L	E	R	F	R	S	L	I	P	S	Y	I	R	D	S	T	V	A	V	V	V	Y	D	I
Template Known Secondary structure							S	T	T	S	S										T	S					S						S											T	T													S	S	G	G	G	T	T						T	T		S								T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.				.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																	.	.	.	.																					.	.	.
Query SS confidence																	.	.	.	.																					.	.	.
Query Sequence		D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	.	.	.	.	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	.	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L
Query Conservation																	.	.	.	.																					.	.	.
Alig confidence																	.	.	.	.																					.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.
Template Sequence		T	N	V	N	S	F	Q	Q	T	T	K	W	I	D	D	V	R	T	E	R	G	S	D	V	I	I	M	L	V	G	N	K	T	D	L	A	D	K	R	Q	V	S	I	E	E	G	E	R	K	A	K	E	L	N	.	.	.	.	.	.	.	.	.	V	M	F	I	E	T	S	A	K	A	G	Y	N	V	K	Q	L
Template Known Secondary structure		T							T													T	T	S	S									G	G	G		T	T			S												T	T	.	.	.	.	.	.	.	.	.							B	T	T	T	T	B	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		545	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	R	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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