Job Description P0A705 Confidence 97.44% Date Thu Jan 5 11:04:22 GMT 2012 Rank 292 Aligned Residues 160 % Identity 23% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.																				.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	L	E	E	A	V	M	S	D	R	D	T	G	A	A	A	E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y
Template Known Secondary structure											S								S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		432	.	.	.	.	.																	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.						.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.	.	.	.	.
Query Sequence		H	V	E	T	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	I	T	F	L	D	T	P	G	.	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	.	.	.	.	.	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.	.	.	.	.													.	.
Template Conservation																																																																			.	.
Template Sequence		G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	.	Q	Q	A	G	I	Q	A	K	A	F	K	E	A
Template Known Secondary structure				S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	.	.	G	G										T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.
			490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L
Query Conservation		.
Alig confidence		.														.																.	.	.	.	.	.	.	.	.								.	.
Template Conservation																.																.	.	.	.	.	.	.	.	.								.	.
Template Sequence		V	G	E	I	G	S	I	I	V	T	K	L	D	G	.	S	A	K	G	G	G	A	L	S	A	V	A	E	T	K	.	.	.	.	.	.	.	.	.	A	P	I	K	F	I	G	.	.	I	G	E	G	I	D	D	L
Template Known Secondary structure		S		S									S	S	S	.		S	T	T										S	S	.	.	.	.	.	.	.	.	.								.	.		S	S	S	S	S	S
Template Predicted Secondary structure																.																.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.										.	.	.	270	.	.	.			.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions