Job Description P0A705 Confidence 99.05% Date Thu Jan 5 11:04:22 GMT 2012 Rank 120 Aligned Residues 153 % Identity 18% Template c2q3fB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp Resolution 2.10 Å

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		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.				.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																						.																												.																		.	.	.
Query SS confidence																						.																												.																		.	.	.
Query Sequence		P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	.	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	.	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	.	.	.	A	R	G	A	Q	A	T	D	I	V	V
Query Conservation																						.																												.																		.	.	.
Alig confidence																						.																												.																		.	.	.
Template Conservation
Template Sequence		P	R	I	L	L	X	G	L	R	R	S	G	K	S	S	I	Q	K	V	V	F	H	K	X	S	P	N	E	T	L	F	L	E	S	T	N	K	I	C	R	E	D	V	S	N	S	S	F	V	N	F	Q	I	W	D	F	P	G	Q	I	D	F	F	D	P	T	F	D	Y	E	X	I	F	R	G	T	G	A	L	I
Template Known Secondary structure									S	T	T	S	S										S				G	G	G	G	G	G						S									S	S											S				T	T		T	T									T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.						490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.										.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	.	.	.	.	.	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	.	.	.	.	.	.	.	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H
Query Conservation																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		F	V	I	D	S	Q	D	D	Y	X	E	A	L	A	R	L	H	L	T	V	T	R	A	Y	K	V	N	T	D	I	N	F	E	V	F	I	H	K	V	D	G	L	S	D	D	H	K	I	E	T	Q	R	D	I	H	Q	R	A	N	D	D	L	A	D	A	G	L	E	K	I	H	.	.	.	.	L	S	F	Y	L
Template Known Secondary structure						T	T	S																					T	T										T	T	S	S																							T	T		T	T	S		.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		T	S	I	Y	D	H	.	S	I	F	E	A	F	S	K	V	V
Template Known Secondary structure				T	T	S	S	.
Template Predicted Secondary structure								.
Template SS confidence
		200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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