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Job DescriptionP0A705
Confidence99.97%DateThu Jan 5 11:04:22 GMT 2012
Rank29Aligned Residues254
% Identity26%Templatec2plfA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   388.390... ......400.........410.........420 .........430... ..
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Query Sequence  EPRAPV. VTIMGHVDHGKTSLLDYIRSTKVASGE. . . AGGITQHIGAYHV. . . . . . . . . . . . . . . . . . . . . . . . . . . . ET
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Template Sequence  KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK
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SSTTSSSTTSS
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TTS
TTTTSSS

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S

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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   436...440.........450.........460.........470..... ....480.........490. ........500..... ....510..
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Query Sequence  ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV. MPQTIEAIQHAKAAQV. PVVVAVNKIDKPEA. DPDRVKN
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Template Sequence  FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR
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SS


SSSTTS
STTS
SS
TT

S
GGGS
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   513......520.........530.........540.........550.........560.........570... ......580....
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Query Sequence  ELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESF. . . . . . . . LDKGRGPVATV
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Template Sequence  QIKQF. . TKGTWAENVPIIPVSALHKINIDSLIEGIEE. . YIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGG
Template Known Secondary structure  TT..STTSGGGG


BTTTTBS..S





TTS





TT

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   165.... 170.........180.........190.........200 .........210.........220.........230.........240
 
   585....590.........600. ........610.........620.........630....... ..640....
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Query Sequence  LVREGTLHKGDIVLCGF. . . . . . . . . . . . . . EYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAA. . . . . . GDEVTVV
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Template Sequence  SIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIR. FGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA
Template Known Secondary structure  S
TT

GGGS


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GGGTTTTTTTT
T
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   241........250.........260.........270.........280 .........290.........300.........310.........
 
   645.
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Query Sequence  RD
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Template Sequence  DA
Template Known Secondary structure  T
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   320.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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