Job Description P0A705 Confidence 98.39% Date Thu Jan 5 11:04:22 GMT 2012 Rank 250 Aligned Residues 143 % Identity 17% Template c2o52B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-4b; PDBTitle: crystal structure of human rab4b in complex with gdp Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	V	I	G	S	A	G	T	G	K	S	C	L	L	H	Q	F	I	E	V	E	F	G	S	R	V	V	N	V	G	G	K	T	.	.	.	.	.	.	.	.	.	.	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	S	V	T	R	S	Y	Y	R	G	A	A	G	A	L	L	V	Y	D	I	T	S
Template Known Secondary structure						S	S	T	T	S	S																					T	T			.	.	.	.	.	.	.	.	.	.									T	T	G	G	G	T	S								T	T		S								T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		474	.	.	.	.	.	480	.	.	.	.	.					.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		G	V	M	P	Q	T	I	E	A	I	Q	H	.	.	.	.	A	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																																	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence		R	E	T	Y	N	S	L	A	A	W	L	T	D	A	R	T	L	A	S	P	N	I	V	V	I	L	C	G	N	K	K	D	L	D	P	E	R	E	V	T	F	L	E	A	S	R	F	A	.	.	.	.	.	.	Q	E	N	E	L	M	F	L	E	T	S	A	L	T	G	E	N	V	E	E	A	F	L	K	C	A
Template Known Secondary structure							T												T		T	T										G	G	G	G	G	G			S										.	.	.	.	.	.			T	T								T	T	T		T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		167	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions