Job Description P0A705 Confidence 96.46% Date Thu Jan 5 11:04:22 GMT 2012 Rank 314 Aligned Residues 129 % Identity 20% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.					.	.	.	.	.	430	.
Predicted Secondary structure																																																		.							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	L	E	E	A	V	M	S	D	R	D	T	G	A	A	A	E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	.	G	E	A	G	G	I	.	.	.	.	T	Q	H	I	G	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F
Template Known Secondary structure								T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
																				432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.						.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	.	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	.	.	.	.	.	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.	.	.	.													.	.
Template Conservation																																																																					.	.
Template Sequence		F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	.	.	Q	D	A	A	N	T	A	K	A	F	N
Template Known Secondary structure					S	S				T	T													T	T		S											S	S																		S								T	T	T	G	.	.	G	G	G
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	V	P	V	V	V	A	V	N	K	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	L	P	L	T	G	V	V	L	T	K	V	D
Template Known Secondary structure		T	T		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions