Job Description P0A705 Confidence 96.88% Date Thu Jan 5 11:04:22 GMT 2012 Rank 308 Aligned Residues 149 % Identity 17% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.																				.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		R	D	T	G	A	A	A	E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S
Template Known Secondary structure		S	S								S	S									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
															438	.	440	.	.	.	.	.	.	.			.	.	450	.	.	.	.	.					.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	I	T	F	L	D	T	P	G	.	.	H	A	A	F	T	S	M	R	.	.	.	.	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	V	V	V	A	V	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.																				.	.
Template Conservation																																																										.	.
Template Sequence		I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	.	.	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T
Template Known Secondary structure														T		S										S	S																			S								S	S	S		.	.	S													S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		K	I	D	K	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	.	G	T	G	I	D	E	L
Query Conservation																																									.
Alig confidence					.																	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation					.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	D	.	G	D	A	R	G	G	A	A	L	S	A	R	H	V	T	G	.	.	.	.	.	.	.	.	.	.	.	.	K	P	I	Y	F	A	G	V	S	E	K	P	E	G	L
Template Known Secondary structure			S	S	.	S		S												S		.	.	.	.	.	.	.	.	.	.	.	.						B				S	S	G	G	G
Template Predicted Secondary structure					.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.													.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions