Job Description P0A705 Confidence 98.65% Date Thu Jan 5 11:04:22 GMT 2012 Rank 203 Aligned Residues 145 % Identity 21% Template c2il1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp Resolution 2.10 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D
Query Conservation
Alig confidence																									.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		V	I	I	I	G	S	R	G	V	G	K	T	S	L	M	E	R	F	T	D	S	T	V	.	.	.	.	.	.	G	V	D	F	K	I	K	T	V	E	L	R	G	K	K	I	R	L	Q	I	W	D	T	A	G	Q	E	R	F	N	S	I	T	S	A	Y	Y	R	S	A	K	G	I	I	L	V	Y	D	I	T	K
Template Known Secondary structure							S	T	T	S	S													T	.	.	.	.	.	.	T											T	T													S	G	G	G												S								T	T
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.					.	490	.	.	.	.	.	.	.	.	.	500	.	.	.				.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																.	.	.
Query SS confidence																	.	.	.	.																.	.	.
Query Sequence		G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	.	.	.	.	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	.	.	.	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D
Query Conservation																	.	.	.	.																.	.	.
Alig confidence																	.	.	.	.																.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.
Template Sequence		K	E	T	F	D	D	L	P	K	W	M	K	M	I	D	K	Y	A	S	E	D	A	E	L	L	L	V	G	N	K	L	D	C	E	T	D	R	E	I	T	R	Q	Q	G	E	K	F	A	Q	Q	I	T	.	.	.	.	.	.	.	.	G	M	R	F	C	E	A	S	A	K	D	N	F	N	V	D	E	I	F	L
Template Known Secondary structure							T												S		T	T										G	G	G	G	G	G			S											T	S	T	.	.	.	.	.	.	.	.	T							B	T	T	T	T	B	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.									.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		547	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	L	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	V	D	D	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions