Job Description P0A705 Confidence 98.35% Date Thu Jan 5 11:04:22 GMT 2012 Rank 256 Aligned Residues 140 % Identity 16% Template c2hupB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:ras-related protein rab-43; PDBTitle: crystal structure of human rab43 in complex with gdp Resolution 2.05 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	V	G	D	A	S	V	G	K	T	C	V	V	Q	R	F	K	T	G	A	F	.	.	.	.	.	.	.	.	.	.	.	D	F	T	M	K	T	L	E	I	R	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	I	T	Q	S	Y	Y	R	S	A	N	G	A	I	L	A	Y	D	I	T	K
Template Known Secondary structure								T	T	S	S											S			.	.	.	.	.	.	.	.	.	.	.																			T	T		G	G	G									T	T		S								T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		474	.	.	.	.	.	480					.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.				.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																											.	.	.
Query SS confidence									.	.	.	.																											.	.	.
Query Sequence		G	V	M	P	Q	T	I	.	.	.	.	E	A	I	Q	H	A	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	.	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D
Query Conservation									.	.	.	.																											.	.	.
Alig confidence									.	.	.	.																											.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.
Template Sequence		R	S	S	F	L	S	V	P	H	W	I	E	D	V	R	K	Y	A	G	S	N	I	V	Q	L	L	I	G	N	K	S	D	L	S	E	L	R	E	V	S	L	A	E	A	Q	S	L	A	E	H	Y	D	I	L	C	.	.	.	.	.	.	.	.	A	I	E	T	S	A	K	D	S	S	N	V	E	E	A	F	L
Template Known Secondary structure																			S		S											G	G	G	G	G	G			S												T	T		S		.	.	.	.	.	.	.	.						T	T	T		T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.									.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		547	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	L	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	A	T	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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