Job Description P0A705 Confidence 99.95% Date Thu Jan 5 11:04:22 GMT 2012 Rank 32 Aligned Residues 206 % Identity 28% Template c2hdnJ_ PDB info PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution Resolution 2.80 Å

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		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	.	V	V	V	A	V	N	K	I	D
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D
Template Known Secondary structure															S	S									S	S											T	S	S			S	S							T	T	T		S															T											T	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		502			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.							550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure			.	.																																																.	.	.	.	.	.
Query SS confidence			.	.																																																.	.	.	.	.	.
Query Sequence		K	.	.	P	E	A	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L	.	.	.	.	.	.	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F
Query Conservation			.	.																																																.	.	.	.	.	.
Alig confidence			.	.																																																.	.	.	.	.	.
Template Conservation
Template Sequence		M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F
Template Known Secondary structure		T																					T	T	S		T	T	T														T																			S						G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.					600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		L	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I	V	L	C	.	.	.	.	G	F	E	Y	G	R	V	R	A	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.															.
Template Conservation																																														.
Template Sequence		S	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	.	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L
Template Known Secondary structure				T	T	T										B	S				T	T							S	S	S													T	T	.				S				T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions