Job Description P0A705 Confidence 99.95% Date Thu Jan 5 11:04:22 GMT 2012 Rank 31 Aligned Residues 238 % Identity 24% Template c1s0uA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo Resolution 2.40 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.																								.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	I	T	F	L	D	T	P	G	H	A	A
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.
Template Sequence		I	G	M	V	G	H	V	D	H	G	K	T	S	L	T	K	A	L	T	G	V	W	T	D	.	.	.	.	R	G	I	S	I	R	L	G	Y	A	D	C	E	I	R	K	C	P	Q	C	G	T	Y	T	T	K	P	R	C	P	N	C	L	A	E	T	E	F	L	R	R	V	S	F	V	D	S	P	G	H	E	T
Template Known Secondary structure						S		T	T	S	S										S					.	.	.	.																		T	T	T					S	S	S	B		T	T	S			B													S	S
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.	.	.	.		.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																											.																	.															.
Query SS confidence																											.																	.															.
Query Sequence		F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	.	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	.	P	V	V	V	A	V	N	K	I	D	K	P	E	A	.	D	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E
Query Conservation																											.																	.															.
Alig confidence																											.																	.															.													.	.
Template Conservation																																																																								.	.
Template Sequence		L	M	A	T	M	L	S	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	Q	P	Q	T	K	E	H	L	M	A	L	E	I	L	G	I	D	K	I	I	I	V	Q	N	K	I	D	L	V	D	E	K	Q	A	E	E	N	Y	E	Q	I	K	E	F	.	.	V	K	G	T	I	A	E	N
Template Known Secondary structure								T	T		S			S								T	T	S		S	S														T	T											T	T	S	S		T	T	T	T	T	T									.	.		T	T	S	T	T	T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.									.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.
Query Sequence		S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F	.	.	.	.	.	.	.	.	L	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I	V	L	C
Query Conservation																																																.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.											.	.																						.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.											.	.
Template Sequence		A	P	I	I	P	I	N	.	.	.	.	.	.	I	D	V	L	L	K	A	I	Q	D	.	.	F	I	P	T	P	K	R	D	P	D	A	T	P	R	M	Y	V	A	R	S	F	D	I	N	K	P	G	T	E	I	K	D	L	K	G	G	V	L	G	G	A	I	I	Q	G	V	F	K	V	G	D	E	I	E	I
Template Known Secondary structure									.	.	.	.	.	.											.	.		S							T	T	S															S	S			G	G	G													S				T	T
Template Predicted Secondary structure									.	.	.	.	.	.											.	.
Template SS confidence
		201	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		600	.	.															.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.						630	.	.	.	.	.	.	.		.	.	640	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.									.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.									.
Query Sequence		G	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	R	V	R	A	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L	.	.	.	.	.	G	L	S	G	V	P	A	A	.	G	D	E	V	T	V	V	R	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.									.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																	.	.	.	.	.									.
Template Conservation																													.
Template Sequence		R	P	G	I	K	V	T	E	G	N	K	T	F	W	K	P	L	T	T	K	I	V	S	L	A	A	G	.	N	T	I	L	R	K	A	H	P	G	G	L	I	G	V	G	T	T	L	D	P	Y	L	T	K	S	D	A	L	T	G	S	V	V	G	L	P	G	T
Template Known Secondary structure										T	T																	T	.	T				S				S	S	S							S	S		G	G	G	T	G	G	G	T	T	T	T					S	T	T
Template Predicted Secondary structure																													.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions