Job Description P0A705 Confidence 99.96% Date Thu Jan 5 11:04:22 GMT 2012 Rank 30 Aligned Residues 260 % Identity 24% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																						.																					.	.
Query SS confidence																						.																					.	.
Query Sequence		E	E	A	V	M	S	D	R	D	T	G	A	A	A	E	P	R	A	P	V	.	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	.	.	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A
Query Conservation																						.																					.	.
Alig confidence																						.																					.	.
Template Conservation
Template Sequence		D	L	Q	N	E	V	D	Q	E	L	L	K	D	M	Y	G	K	E	H	V	N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	D	K	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H	R	R	F	S	L	L	D	A	P	G	A	S	Q
Template Known Secondary structure		S	S	G	G	G		S	S	S				S	S	S													T	T	S	S												T	T	S	S																				S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.								.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.	.						.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.																			.															.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.																			.															.	.	.	.	.
Query Sequence		F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	.	.	.	.	.	.	.	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	.	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	.	.	.	P	D	R	V	K	N	E	L	S	Q	Y
Query Conservation																										.	.	.	.	.	.	.																			.															.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																			.															.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	.	.	.	.	.	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E	R	Y	K	E	C	V	D	K	L	S	M	F
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	S									S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		340												.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		518	.	520	.	.	.	.	.	.			.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.												.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure											.	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	L	P	E	E	W	G	G	.	.	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	.	.	.	.	.	.	.	.	.	.	.	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F	L	D	K	G	R	G	P	V	A	T	V
Query Conservation											.	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																					.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																																							.	.
Template Sequence		L	R	R	V	A	G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y	L	D	S	M	T	H	L	E	R	K	V	N	A	P	F	I	M	P	I	A	S	K	Y	.	.	K	D	L	G	T	I	L	E	G
Template Known Secondary structure										T	T	T	T							B	T	T	T	T	B	T	T	S	S				T	T	T		T	T			S																		T	S											.	.		S	S	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480	.	.	.	.	.	.
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.			.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.			630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure																				.	.																												.	.
Query SS confidence																				.	.																												.	.
Query Sequence		L	V	R	E	G	T	L	H	K	G	D	I	V	L	C	G	F	E	.	.	Y	G	R	V	R	A	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L	.	.	G	L	S	G	V	P	A	A	G	D	E	V	T	V	V	R	D
Query Conservation																				.	.																												.	.
Alig confidence																				.	.																												.	.
Template Conservation
Template Sequence		K	I	E	A	G	S	I	K	K	N	S	N	V	L	V	M	P	I	N	Q	T	L	E	V	T	A	I	Y	D	E	A	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L	R	V	R	G	D	D	S	D	V	Q	T	G	Y	V	L	T	S	T	K	N
Template Known Secondary structure					B	S				S	S							T	T	T											T	T					S				T	T									S			S	S			T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions