Job Description P0A705 Confidence 96.76% Date Thu Jan 5 11:04:22 GMT 2012 Rank 311 Aligned Residues 129 % Identity 24% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	L	E	E	A	V	M	S	D	R	D	T	G	A	A	A	E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	.	.	.	.	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y
Template Known Secondary structure								T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
																			432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.						.	.	450			.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.				.	.							.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.				.	.							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	.	.	.	.	.	H	A	A	.	.	F	T	S	M	R	A	.	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.				.	.							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.				.	.							.																			.	.
Template Conservation																																																																						.	.
Template Sequence		G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	.	.	Q	K	A	Y	D	L	A	S	R	F
Template Known Secondary structure				S	S				T	T													T	T		S									S			S	S	T																		S								T	T	T	G	.	.	G	G	G
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	A	S	P	I	G	S	V	I	I	T	K	M	D
Template Known Secondary structure			T	T		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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